RNA id: TU905054


Basic Information

Item Value
RNA id TU905054
length 629
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G795177
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32501741 ~ 32502369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcttcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctcctttggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgggcttttaacagacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacgtctggacagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905052 lncRNA downstream 2812 32494470 ~ 32498929 (-) True G795175
TU905044 lncRNA downstream 7996 32493459 ~ 32493745 (-) True G795168
TU904688 lncRNA downstream 12226 32489093 ~ 32489515 (-) True G794880
TU904687 lncRNA downstream 12733 32488795 ~ 32489008 (-) True G794879
TU904678 lncRNA downstream 13708 32481075 ~ 32488033 (-) True G794876
TU905048 lncRNA upstream 10727 32513096 ~ 32520039 (-) True G795171
TU905047 lncRNA upstream 34141 32536510 ~ 32549007 (-) True G795170
TU905059 lncRNA upstream 38797 32541166 ~ 32542179 (-) True G795182
TU905066 lncRNA upstream 92001 32594370 ~ 32594623 (-) True G795188
TU905081 lncRNA upstream 125373 32627742 ~ 32651703 (-) True G795198
XM_021615417.2 mRNA downstream 53840 32274254 ~ 32447901 (-) False LOC110531927
XM_021615421.2 mRNA downstream 53840 32274254 ~ 32447901 (-) True LOC110531927
XR_005053223.1 mRNA downstream 257819 32241007 ~ 32243922 (-) False LOC118966025
XR_005053224.1 mRNA downstream 257819 32241007 ~ 32243922 (-) True LOC118966025
XM_036987801.1 mRNA downstream 262278 32222127 ~ 32239463 (-) False LOC110531926
XR_005053225.1 mRNA upstream 10722 32513091 ~ 32513996 (-) True LOC118966026
XR_002474778.2 mRNA upstream 13700 32516069 ~ 32520096 (-) False LOC110531930
XR_002474779.2 mRNA upstream 13700 32516069 ~ 32520096 (-) True LOC110531930
XM_021615425.2 mRNA upstream 52990 32555359 ~ 32594324 (-) True etnppl
XM_021615442.2 mRNA upstream 96998 32599367 ~ 32956069 (-) False LOC110531933
TU904054 other downstream 473473 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 839543 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 1082768 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 1097872 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 2143777 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 1548690 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 2367586 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 2851850 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 2883484 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 2989657 35492026 ~ 35521332 (-) True LOC118966032

Expression Profile