RNA id: TU904700



Basic Information


Item Value
RNA id TU904700
length 509
RNA type TUCP
GC content 0.43
exon number 1
gene id G794892
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32501847 ~ 32502355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaattattcagcccctttactttcagtgcagcaaactctgtccagacgttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtctgttaaaagcccagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatccaaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaagcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU904698 lncRNA upstream 7601 32494034 ~ 32494246 (+) True G794890
TU904657 lncRNA upstream 20946 32480669 ~ 32480901 (+) True G794871
TU904646 lncRNA upstream 25524 32476120 ~ 32476323 (+) True G794860
TU904637 lncRNA upstream 33485 32467902 ~ 32468362 (+) True G794853
TU904631 lncRNA upstream 36274 32465271 ~ 32465573 (+) True G794847
TU904702 lncRNA downstream 1403 32503758 ~ 32504005 (+) True G794894
TU904720 lncRNA downstream 38812 32541167 ~ 32542273 (+) True G794912
TU904692 lncRNA downstream 59162 32561517 ~ 32562743 (+) True G794884
TU904741 lncRNA downstream 125203 32627558 ~ 32651727 (+) True G794932
TU904808 lncRNA downstream 218265 32720620 ~ 32720875 (+) True G794998
XM_021615423.2 mRNA upstream 3245 32494490 ~ 32498602 (+) True rpl34
NM_001160518.1 mRNA upstream 377094 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 387548 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 423124 32077618 ~ 32078723 (+) True LOC118965935
XM_021615397.2 mRNA upstream 474633 32002866 ~ 32027214 (+) True LOC110531918
XM_021615424.1 mRNA downstream 17723 32520078 ~ 32539651 (+) True ostc
trnag-ucc-3 mRNA downstream 532590 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 533096 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 540237 33042592 ~ 33042663 (+) True trnag-ucc-6
trnag-ucc-7 mRNA downstream 541648 33044003 ~ 33044074 (+) True trnag-ucc-7
TU904135 other upstream 376996 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other upstream 377111 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other upstream 377409 32122682 ~ 32124438 (+) True zgc:112271
TU903612 other upstream 745402 31753335 ~ 31756445 (+) True LOC110531915
TU903452 other upstream 904929 31595996 ~ 31596918 (+) True G793757
TU904701 other downstream 41 32502396 ~ 32502749 (+) True G794893
TU904694 other downstream 81251 32583606 ~ 32587388 (+) True G794886
TU906563 other downstream 1619067 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 2053576 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2862633 35364988 ~ 35372148 (+) True G797932

Expression Profile