RNA id: TU904702


Basic Information

Item Value
RNA id TU904702
length 248
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G794894
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32503758 ~ 32504005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgggttgtgccgtggttgaggtctttgtgggctatactcagccttgtctcaggatggtaagttggtggttgaagatatccctctagtggtgtgggggctgtgctttggcaaagtgggtggggttatatccttcctgtttggccctgtccgggggtgtcctcggatggggccacagtgtctcttgaccaatcctgtctcagcctccagtatttatgctgcagtagtttgtgtcggggggctagggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU904698 lncRNA upstream 9512 32494034 ~ 32494246 (+) True G794890
TU904657 lncRNA upstream 22857 32480669 ~ 32480901 (+) True G794871
TU904646 lncRNA upstream 27435 32476120 ~ 32476323 (+) True G794860
TU904637 lncRNA upstream 35396 32467902 ~ 32468362 (+) True G794853
TU904631 lncRNA upstream 38185 32465271 ~ 32465573 (+) True G794847
TU904720 lncRNA downstream 37162 32541167 ~ 32542273 (+) True G794912
TU904692 lncRNA downstream 57512 32561517 ~ 32562743 (+) True G794884
TU904741 lncRNA downstream 123553 32627558 ~ 32651727 (+) True G794932
TU904808 lncRNA downstream 216615 32720620 ~ 32720875 (+) True G794998
TU904809 lncRNA downstream 218494 32722499 ~ 32722823 (+) True G794999
XM_021615423.2 mRNA upstream 5156 32494490 ~ 32498602 (+) True rpl34
NM_001160518.1 mRNA upstream 379005 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 389459 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 425035 32077618 ~ 32078723 (+) True LOC118965935
XM_021615397.2 mRNA upstream 476544 32002866 ~ 32027214 (+) True LOC110531918
XM_021615424.1 mRNA downstream 16073 32520078 ~ 32539651 (+) True ostc
trnag-ucc-3 mRNA downstream 530940 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 531446 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 538587 33042592 ~ 33042663 (+) True trnag-ucc-6
trnag-ucc-7 mRNA downstream 539998 33044003 ~ 33044074 (+) True trnag-ucc-7
TU904701 other upstream 1009 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 1403 32501847 ~ 32502355 (+) True G794892
TU904135 other upstream 378907 32122682 ~ 32124851 (+) False zgc:112271
TU904136 other upstream 379022 32122682 ~ 32124736 (+) False zgc:112271
TU904137 other upstream 379320 32122682 ~ 32124438 (+) True zgc:112271
TU904694 other downstream 79601 32583606 ~ 32587388 (+) True G794886
TU906563 other downstream 1617417 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 2051926 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2860983 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3809124 36313129 ~ 36316805 (+) True G799053

Expression Profile