RNA id: TU904741


Basic Information

Item Value
RNA id TU904741
length 463
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G794932
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32627558 ~ 32651727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttttgccacatttcaggctccaaacataaagatataaaactgtattttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgctaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaaattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcattcgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU904692 lncRNA upstream 64815 32561517 ~ 32562743 (+) True G794884
TU904720 lncRNA upstream 85285 32541167 ~ 32542273 (+) True G794912
TU904702 lncRNA upstream 123553 32503758 ~ 32504005 (+) True G794894
TU904698 lncRNA upstream 133312 32494034 ~ 32494246 (+) True G794890
TU904657 lncRNA upstream 146657 32480669 ~ 32480901 (+) True G794871
TU904808 lncRNA downstream 68893 32720620 ~ 32720875 (+) True G794998
TU904809 lncRNA downstream 70772 32722499 ~ 32722823 (+) True G794999
TU904810 lncRNA downstream 71688 32723415 ~ 32723665 (+) True G795000
TU904812 lncRNA downstream 74239 32725966 ~ 32726279 (+) True G795002
TU904822 lncRNA downstream 86678 32738405 ~ 32739063 (+) True G795010
XM_021615424.1 mRNA upstream 87907 32520078 ~ 32539651 (+) True ostc
XM_021615423.2 mRNA upstream 128956 32494490 ~ 32498602 (+) True rpl34
NM_001160518.1 mRNA upstream 502805 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 513259 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 548835 32077618 ~ 32078723 (+) True LOC118965935
trnag-ucc-3 mRNA downstream 383218 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 383724 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 390865 33042592 ~ 33042663 (+) True trnag-ucc-6
trnag-ucc-7 mRNA downstream 392276 33044003 ~ 33044074 (+) True trnag-ucc-7
trnag-ucc-8 mRNA downstream 395084 33046811 ~ 33046882 (+) True trnag-ucc-8
TU904694 other upstream 40170 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 124809 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 125203 32501847 ~ 32502355 (+) True G794892
TU904135 other upstream 502707 32122682 ~ 32124851 (+) False zgc:112271
TU906563 other downstream 1469695 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1904204 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2713261 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3661402 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 4382691 37034418 ~ 37035918 (+) True G799578

Expression Profile