RNA id: TU905121



Basic Information


Item Value
RNA id TU905121
length 391
lncRNA type sense_over
GC content 0.63
exon number 2
gene id G795236
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32686182 ~ 32715890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaggttgaaagtcatgcgtcctccgatacacaacccaaccagccgcactgcttcttaacacagcgcgcatccaacccggaagccagccgcaccaatgtgtcggaggctacaccgtgcacctggcaaccttggttagcgtgcactgcgcccggcccgccacaggagtcgctggtgcgcgatgagacaaggacatccctactgaccaagccctccctaacccggacgacgctaggccaattgtgtgtcgccccacggacctcccggtcgctgccggttacgacagagcctgggcgcgaacccaggtactctgatggcacagctggcgcagtacagcgcccttaaccactgcgccacccgggaggcctcccgggtgtcgtagcctctgacacat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU905081 lncRNA downstream 34479 32627742 ~ 32651703 (-) True G795198
TU905066 lncRNA downstream 91559 32594370 ~ 32594623 (-) True G795188
TU905047 lncRNA downstream 137175 32536510 ~ 32549007 (-) True G795170
TU905059 lncRNA downstream 144003 32541166 ~ 32542179 (-) True G795182
TU905048 lncRNA downstream 166143 32513096 ~ 32520039 (-) True G795171
TU905144 lncRNA upstream 87 32715977 ~ 32716239 (-) True G795258
TU905150 lncRNA upstream 10006 32725896 ~ 32726113 (-) True G795264
TU905152 lncRNA upstream 11691 32727581 ~ 32727829 (-) True G795266
TU905153 lncRNA upstream 12265 32728155 ~ 32728393 (-) True G795267
TU905337 lncRNA upstream 255570 32971460 ~ 33025278 (-) False G795420
XM_021615425.2 mRNA downstream 91858 32555359 ~ 32594324 (-) True etnppl
XR_002474778.2 mRNA downstream 166086 32516069 ~ 32520096 (-) False LOC110531930
XR_002474779.2 mRNA downstream 166086 32516069 ~ 32520096 (-) True LOC110531930
XR_005053225.1 mRNA downstream 172186 32513091 ~ 32513996 (-) True LOC118966026
XM_021615421.2 mRNA downstream 238281 32274254 ~ 32447901 (-) True LOC110531927
trnap-agg-9 mRNA upstream 313847 33029737 ~ 33029808 (-) True trnap-agg-9
trnap-agg-10 mRNA upstream 315231 33031121 ~ 33031192 (-) True trnap-agg-10
trnap-agg-11 mRNA upstream 316619 33032509 ~ 33032580 (-) True trnap-agg-11
trnap-agg-12 mRNA upstream 318004 33033894 ~ 33033965 (-) True trnap-agg-12
trnap-agg-13 mRNA upstream 319919 33035809 ~ 33035881 (-) True trnap-agg-13
TU904054 other downstream 657914 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 1023984 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 1267209 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 1282313 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 2328218 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 1335169 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 2154065 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 2638329 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 2669963 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 2776136 35492026 ~ 35521332 (-) True LOC118966032

Expression Profile