RNA id: TU904808


Basic Information

Item Value
RNA id TU904808
length 256
lncRNA type intronic
GC content 0.36
exon number 1
gene id G794998
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32720620 ~ 32720875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATCTCACCCCTGCTTTACAGCATTAGCCATTTGCGTTCCAAAAGGTTTTTCCACAATTCTATTTCTTTATATTGCGATATGCCTGGCAGTCTTCTCTCTgccttaatgaatatgatgtcagttcggttgtcatctgagacattctcatcaacgataagatgacaaactctacagtggaaagtctacacagagttatcggattcacatggaattgttgttcaatttaaatgtttgaatatgaaattatttgtgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU904741 lncRNA upstream 68893 32627558 ~ 32651727 (+) True G794932
TU904692 lncRNA upstream 157877 32561517 ~ 32562743 (+) True G794884
TU904720 lncRNA upstream 178347 32541167 ~ 32542273 (+) True G794912
TU904702 lncRNA upstream 216615 32503758 ~ 32504005 (+) True G794894
TU904698 lncRNA upstream 226374 32494034 ~ 32494246 (+) True G794890
TU904809 lncRNA downstream 1624 32722499 ~ 32722823 (+) True G794999
TU904810 lncRNA downstream 2540 32723415 ~ 32723665 (+) True G795000
TU904812 lncRNA downstream 5091 32725966 ~ 32726279 (+) True G795002
TU904822 lncRNA downstream 17530 32738405 ~ 32739063 (+) True G795010
TU904828 lncRNA downstream 30299 32751174 ~ 32829127 (+) True G795016
XM_021615424.1 mRNA upstream 180969 32520078 ~ 32539651 (+) True ostc
XM_021615423.2 mRNA upstream 222018 32494490 ~ 32498602 (+) True rpl34
NM_001160518.1 mRNA upstream 595867 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 606321 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 641897 32077618 ~ 32078723 (+) True LOC118965935
trnag-ucc-3 mRNA downstream 314070 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 314576 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 321717 33042592 ~ 33042663 (+) True trnag-ucc-6
trnag-ucc-7 mRNA downstream 323128 33044003 ~ 33044074 (+) True trnag-ucc-7
trnag-ucc-8 mRNA downstream 325936 33046811 ~ 33046882 (+) True trnag-ucc-8
TU904694 other upstream 133232 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 217871 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 218265 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 595884 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 1400547 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1835056 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2644113 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3592254 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 4313543 37034418 ~ 37035918 (+) True G799578

Expression Profile