RNA id: TU905152



Basic Information


Item Value
RNA id TU905152
length 249
lncRNA type intronic
GC content 0.34
exon number 1
gene id G795266
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32727581 ~ 32727829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tctgtatagttgtctaatgttgttgGGGCTTATTAATCGGTtgatgttactcctgaatcactatgataaataAAATAGTTTAGTAGAactgagatttactttgaagtgCAAAGTGTAGCAATGAAGACGTCATTGACACAGAATGTCGTGAACCAAAATATTGAGTTCAATTCCCAGGTGAGGACTTGTTGAATAATAATGACTgcataaatgaacatgcacaatgtaatcatgtactgtgtcaaatat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU905150 lncRNA downstream 1468 32725896 ~ 32726113 (-) True G795264
TU905144 lncRNA downstream 11342 32715977 ~ 32716239 (-) True G795258
TU905121 lncRNA downstream 11691 32686182 ~ 32715890 (-) True G795236
TU905081 lncRNA downstream 75878 32627742 ~ 32651703 (-) True G795198
TU905066 lncRNA downstream 132958 32594370 ~ 32594623 (-) True G795188
TU905153 lncRNA upstream 326 32728155 ~ 32728393 (-) True G795267
TU905337 lncRNA upstream 243631 32971460 ~ 33025278 (-) False G795420
TU905359 lncRNA upstream 243631 32971460 ~ 32998728 (-) False G795420
TU905361 lncRNA upstream 243631 32971460 ~ 33029183 (-) False G795420
TU905364 lncRNA upstream 243631 32971460 ~ 32999378 (-) False G795420
XM_021615425.2 mRNA downstream 133257 32555359 ~ 32594324 (-) True etnppl
XR_002474778.2 mRNA downstream 207485 32516069 ~ 32520096 (-) False LOC110531930
XR_002474779.2 mRNA downstream 207485 32516069 ~ 32520096 (-) True LOC110531930
XR_005053225.1 mRNA downstream 213585 32513091 ~ 32513996 (-) True LOC118966026
XM_021615421.2 mRNA downstream 279680 32274254 ~ 32447901 (-) True LOC110531927
trnap-agg-9 mRNA upstream 301908 33029737 ~ 33029808 (-) True trnap-agg-9
trnap-agg-10 mRNA upstream 303292 33031121 ~ 33031192 (-) True trnap-agg-10
trnap-agg-11 mRNA upstream 304680 33032509 ~ 33032580 (-) True trnap-agg-11
trnap-agg-12 mRNA upstream 306065 33033894 ~ 33033965 (-) True trnap-agg-12
trnap-agg-13 mRNA upstream 307980 33035809 ~ 33035881 (-) True trnap-agg-13
TU904054 other downstream 699313 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 1065383 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 1308608 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 1323712 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 2369617 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 1323230 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 2142126 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 2626390 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 2658024 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 2764197 35492026 ~ 35521332 (-) True LOC118966032

Expression Profile