RNA id: TU904976


Basic Information

Item Value
RNA id TU904976
length 1129
lncRNA type inter_gene
GC content 0.33
exon number 4
gene id G795141
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32971724 ~ 33029181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaatACTGCAAAATaattacttacagagtgcatcaaacgtgatttgaacttgtttatggaaaattggttatttctgtagttcaattgctgcaacttgctgaaaattgtctatagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaaaatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccctatcatctagtttgaacagttatgttttaaacattgtatccagagttcatcaaacatgatcttagagcttgtttatggaaaagtggttatatctgtagttcaattgctgcaacttgctgaaaattgtccatagtgtccctataatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctggtttgaacagttatgtttaaaacattgtatccagagtgcatcaaacatgattttagaccgtggttatttctgtagttcaattgctgcaacttgctgaaaattggccctatcatctagtttgaacagttttgtttaaaacattgtatccagagtgcatcaaacatgattttagaccttgtttatggaaaattggttatttctgtagttcaattgctgcaacttgctgaaaattgtccccagtgtccctatcatctagtttgaacagttatgtttaaaacattgtatccagagttcattaaacatgattttagagcttgtttatggaaaagtggttatttctgtagtataattgctgcaacttgctaaaaattgtccatataatctagtttgaacagttatgtttaaaacattgtatccagagggcatcaaacatgattttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccctatcatctagtttgaacagttatgtttaaaacattgtatccagagttcatcaaacatgattttagagcttgtttatggaaaagtggtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905022 lncRNA upstream 9353 32960420 ~ 32962371 (+) True G795146
TU904828 lncRNA upstream 142597 32751174 ~ 32829127 (+) True G795016
TU904822 lncRNA upstream 232661 32738405 ~ 32739063 (+) True G795010
TU904812 lncRNA upstream 245445 32725966 ~ 32726279 (+) True G795002
TU904810 lncRNA upstream 248059 32723415 ~ 32723665 (+) True G795000
TU905001 lncRNA downstream 8165 32983375 ~ 33005205 (+) False G795141
TU904978 lncRNA downstream 8991 32984201 ~ 32999377 (+) False G795141
TU905000 lncRNA downstream 8991 32984201 ~ 32992350 (+) False G795141
TU905007 lncRNA downstream 8991 32984201 ~ 33009392 (+) False G795141
TU905015 lncRNA downstream 8991 32984201 ~ 32990474 (+) False G795141
XM_021615424.1 mRNA upstream 432073 32520078 ~ 32539651 (+) True ostc
XM_021615423.2 mRNA upstream 473122 32494490 ~ 32498602 (+) True rpl34
NM_001160518.1 mRNA upstream 846971 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 857425 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 893001 32077618 ~ 32078723 (+) True LOC118965935
trnag-ucc-3 mRNA downstream 59735 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 60241 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 67382 33042592 ~ 33042663 (+) True trnag-ucc-6
trnag-ucc-7 mRNA downstream 68793 33044003 ~ 33044074 (+) True trnag-ucc-7
trnag-ucc-8 mRNA downstream 71601 33046811 ~ 33046882 (+) True trnag-ucc-8
TU904694 other upstream 384336 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 468975 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 469369 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 846988 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 1146212 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1580721 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2389778 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3337919 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 4059208 37034418 ~ 37035918 (+) True G799578

Expression Profile