RNA id: TU905001


Basic Information

Item Value
RNA id TU905001
length 1561
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G795141
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32971724 ~ 33029181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccctatcatctagtttgaacagttctttaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcatttgctgcaacttgctgaaaattgtccagtgtccctataatctcgtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagacctttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttattgaacagttatgtttaaaacattgtatccagagttcatcaaagatgattttagagcttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaacaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcatttgctgcaacttgctgaaaattgtccagtgtccctataatctcgtttgaacagttctgtaaaaaatgtacttccaaagtgcaaacaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccctatcatctagtttgaacagttatgtttaaaacattgtatccagagttcatcaaagatgattttagagcttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaacaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccctatcatctagtttgaacagttatgtttaaaacattgtatccagagttcatcaaagatgattttagagcttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccacagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905009 lncRNA upstream 3264 32971724 ~ 32980111 (+) False G795141
TU904974 lncRNA upstream 8165 32971724 ~ 32975210 (+) False G795141
TU904976 lncRNA upstream 8165 32971724 ~ 32975210 (+) False G795141
TU904988 lncRNA upstream 8165 32971724 ~ 32975210 (+) False G795141
TU904992 lncRNA upstream 10193 32971724 ~ 32973182 (+) False G795141
TU904984 lncRNA downstream 4264 33009469 ~ 33025278 (+) False G795141
TU905010 lncRNA downstream 5672 33010877 ~ 33029181 (+) False G795141
TU904975 lncRNA downstream 7072 33012277 ~ 33025278 (+) False G795141
TU904990 lncRNA downstream 8514 33013719 ~ 33025278 (+) False G795141
TU905006 lncRNA downstream 8514 33013719 ~ 33016369 (+) False G795141
XM_021615424.1 mRNA upstream 443724 32520078 ~ 32539651 (+) True ostc
XM_021615423.2 mRNA upstream 484773 32494490 ~ 32498602 (+) True rpl34
NM_001160518.1 mRNA upstream 858622 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 869076 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 904652 32077618 ~ 32078723 (+) True LOC118965935
trnag-ucc-3 mRNA downstream 29740 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 30246 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 37387 33042592 ~ 33042663 (+) True trnag-ucc-6
trnag-ucc-7 mRNA downstream 38798 33044003 ~ 33044074 (+) True trnag-ucc-7
trnag-ucc-8 mRNA downstream 41606 33046811 ~ 33046882 (+) True trnag-ucc-8
TU904694 other upstream 395987 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 480626 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 481020 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 858639 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 1116217 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1550726 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2359783 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3307924 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 4029213 37034418 ~ 37035918 (+) True G799578

Expression Profile