RNA id: TU905011


Basic Information

Item Value
RNA id TU905011
length 1425
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G795141
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32971724 ~ 33029181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaacatgatttagaccttgtttatggaaaagtggctatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctttcatctagtttgaacagttttgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccctatcatctattttgaacagttctgtaaaaatgtacttccaaagtgcaaccaaacctgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctagtttgaacagttttgtttaaaacattgtatccagagttcattaaacatgattttagagcttgtttatggaaaagtggttatatctgtagttcaattgctgcaacttgttgaaaattgtccatagtgtccctatcatctattttgaacagttctgtaaaaaaatttacttccaaagtgcaacaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctagtttgaacagttatgtttaaaacattgtatccagagggcatcaaacatgattttagagcttgtttatggaaaagtggttatttctgtagtataattgctgcaacttgctaaaaattgtccatagtgtccctataatctcgtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcatttgctgcaacttgctgaaaattgtccagtgtccctataatctcgtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagacctttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaacaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU904978 lncRNA upstream 3366 32984201 ~ 32999377 (+) False G795141
TU905000 lncRNA upstream 10393 32984201 ~ 32992350 (+) False G795141
TU905015 lncRNA upstream 12269 32984201 ~ 32990474 (+) False G795141
TU904991 lncRNA upstream 17672 32971724 ~ 32985071 (+) False G795141
TU905009 lncRNA upstream 22632 32971724 ~ 32980111 (+) False G795141
TU904984 lncRNA downstream 77 33009469 ~ 33025278 (+) False G795141
TU905010 lncRNA downstream 1485 33010877 ~ 33029181 (+) False G795141
TU904975 lncRNA downstream 2885 33012277 ~ 33025278 (+) False G795141
TU904990 lncRNA downstream 4327 33013719 ~ 33025278 (+) False G795141
TU905006 lncRNA downstream 4327 33013719 ~ 33016369 (+) False G795141
XM_021615424.1 mRNA upstream 463092 32520078 ~ 32539651 (+) True ostc
XM_021615423.2 mRNA upstream 504141 32494490 ~ 32498602 (+) True rpl34
NM_001160518.1 mRNA upstream 877990 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 888444 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 924020 32077618 ~ 32078723 (+) True LOC118965935
trnag-ucc-3 mRNA downstream 25553 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 26059 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 33200 33042592 ~ 33042663 (+) True trnag-ucc-6
trnag-ucc-7 mRNA downstream 34611 33044003 ~ 33044074 (+) True trnag-ucc-7
trnag-ucc-8 mRNA downstream 37419 33046811 ~ 33046882 (+) True trnag-ucc-8
TU904694 other upstream 415355 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 499994 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 500388 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 878007 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 1112030 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1546539 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2355596 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3303737 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 4025026 37034418 ~ 37035918 (+) True G799578

Expression Profile