RNA id: TU904990


Basic Information

Item Value
RNA id TU904990
length 1379
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G795141
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 32971724 ~ 33029181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaattgtccagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaacaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccatatcatctagtttgaacagttatgtttaaaacattgtatccagagttcatcaaagatgattttagagcttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccacagtgtccctatcatctagtttgaacagttctgtaaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtggaaacaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccctatcatctagtttgaacagttatgtttaaaatattgtatccagagttcatcaaacatgattttagagcttgtttatggaaaatggttatttctgtagtataattgctgcaacttgctaaaaattgtccatagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtcccgtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaacaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctagtttgaacagttatgtttaaaacattgtatccagagttcattaaacatgattttagagcttgtttatggaaaagtggttatttctgtagtataattgctgcaacttgctaaaaattgtccatagtgtccctatcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905007 lncRNA upstream 4327 32984201 ~ 33009392 (+) False G795141
TU905011 lncRNA upstream 4327 33002743 ~ 33009392 (+) False G795141
TU905001 lncRNA upstream 8514 32983375 ~ 33005205 (+) False G795141
TU904978 lncRNA upstream 14342 32984201 ~ 32999377 (+) False G795141
TU905000 lncRNA upstream 21369 32984201 ~ 32992350 (+) False G795141
TU905376 lncRNA downstream 4272 33029550 ~ 33032181 (+) False trnag-ucc-19
TU905375 lncRNA downstream 6961 33032239 ~ 33061120 (+) True trnag-ucc-3
TU905384 lncRNA downstream 21002 33046280 ~ 33049435 (+) True trnag-ucc-10
TU905381 lncRNA downstream 36360 33061638 ~ 33063828 (+) False trnag-ucc-19
TU905379 lncRNA downstream 37808 33063086 ~ 33066274 (+) True trnag-ucc-19
XM_021615424.1 mRNA upstream 474068 32520078 ~ 32539651 (+) True ostc
XM_021615423.2 mRNA upstream 515117 32494490 ~ 32498602 (+) True rpl34
NM_001160518.1 mRNA upstream 888966 32122759 ~ 32124753 (+) False zgc:112271
XM_021615407.2 mRNA upstream 899420 32111792 ~ 32114299 (+) True LOC110531922
XM_036986938.1 mRNA upstream 934996 32077618 ~ 32078723 (+) True LOC118965935
trnag-ucc-3 mRNA downstream 9667 33034945 ~ 33035016 (+) False trnag-ucc-3
trnag-ucc-4 mRNA downstream 10173 33035451 ~ 33035522 (+) True trnag-ucc-4
trnag-ucc-6 mRNA downstream 17314 33042592 ~ 33042663 (+) True trnag-ucc-6
trnag-ucc-7 mRNA downstream 18725 33044003 ~ 33044074 (+) True trnag-ucc-7
trnag-ucc-8 mRNA downstream 21533 33046811 ~ 33046882 (+) True trnag-ucc-8
TU904694 other upstream 426331 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 510970 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 511364 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 888983 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 1096144 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1530653 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2339710 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3287851 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 4009140 37034418 ~ 37035918 (+) True G799578

Expression Profile