RNA id: TU905394


Basic Information

Item Value
RNA id TU905394
length 381
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G795438
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33116207 ~ 33123231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgattctagaagatcgggtcttcgggttggttcaggctgaggtgtagtcttcttggattggccctgttgggccgtccgtcatccctctgagtcttgttctttgtcacacaatgttcagctaaaaaggagattaggtgtgtgcgctgtcctcagtcacacaatgttcggctagaaaggagattaggtgtgtgcgctggtttctgcaagtcaaggctgtctcttcctcccaatgtgtgggtgtatgtcttatctgtgtgtcctcggcagttagtgtgtgtaatgtgtgtgtgctgtgtgtgtgggtgtgggagctatcctgtatgggacctaacatgttttactgtgaaaatacgttgtctcagttatagcaatgtaatagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905391 lncRNA upstream 9484 33106249 ~ 33106723 (+) True G795437
TU905379 lncRNA upstream 49933 33063086 ~ 33066274 (+) True trnag-ucc-19
TU905381 lncRNA upstream 52379 33061638 ~ 33063828 (+) False trnag-ucc-19
TU905375 lncRNA upstream 55087 33032239 ~ 33061120 (+) True trnag-ucc-3
TU905398 lncRNA downstream 20150 33143381 ~ 33143673 (+) True G795442
TU905402 lncRNA downstream 65117 33188348 ~ 33215920 (+) False G795445
TU905403 lncRNA downstream 65117 33188348 ~ 33233498 (+) True G795445
TU905405 lncRNA downstream 107844 33231075 ~ 33232779 (+) True G795447
TU905447 lncRNA downstream 127790 33251021 ~ 33316895 (+) True G795477
trnag-ucc-47 mRNA upstream 1529 33114607 ~ 33114678 (+) True trnag-ucc-47
trnag-ucc-46 mRNA upstream 5759 33110377 ~ 33110448 (+) True trnag-ucc-46
trnag-ucc-45 mRNA upstream 23609 33092527 ~ 33092598 (+) True trnag-ucc-45
trnag-ucc-44 mRNA upstream 24879 33091257 ~ 33091328 (+) True trnag-ucc-44
trnag-ucc-43 mRNA upstream 26149 33089987 ~ 33090058 (+) True trnag-ucc-43
trnag-ucc-48 mRNA downstream 62 33123293 ~ 33123364 (+) True trnag-ucc-48
trnag-ucc-49 mRNA downstream 1331 33124562 ~ 33124633 (+) True trnag-ucc-49
trnag-ucc-50 mRNA downstream 2724 33125955 ~ 33126026 (+) True trnag-ucc-50
trnag-ucc-51 mRNA downstream 4117 33127348 ~ 33127419 (+) True trnag-ucc-51
trnag-ucc-52 mRNA downstream 5510 33128741 ~ 33128812 (+) True trnag-ucc-52
TU904694 other upstream 528819 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 613458 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 613852 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 991471 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 998191 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1432700 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2241757 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3189898 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3911187 37034418 ~ 37035918 (+) True G799578