RNA id: TU905402



Basic Information


Item Value
RNA id TU905402
length 359
lncRNA type read_through
GC content 0.42
exon number 2
gene id G795445
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33188348 ~ 33233498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caagtgtcacgggactaatctgaaggtaacctgtagtgattaaaatgctagattttttaaccagggacctctcgcaacctaagccataatcatacacctaaaccgtgaaagtgaattatcactttccaccaaaatgacggtcaaattatgagtcgatgtctcaatgttgctactgagctgcacatagcattggtggtatagtggtgagcatagctgccttccaagcagttgacctgggttcgattcccggccaatgcagagcctgaggaattcatttgttttaggggctggatgtcatttcaagtgtattacatttgaatcattatcgttgtacttggaagtcagaattgctcctacat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU905398 lncRNA upstream 44675 33143381 ~ 33143673 (+) True G795442
TU905392 lncRNA upstream 65117 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA upstream 65117 33116207 ~ 33123231 (+) False G795438
TU905394 lncRNA upstream 65117 33116207 ~ 33123231 (+) True G795438
TU905391 lncRNA upstream 81625 33106249 ~ 33106723 (+) True G795437
TU905405 lncRNA downstream 15155 33231075 ~ 33232779 (+) True G795447
TU905447 lncRNA downstream 35101 33251021 ~ 33316895 (+) True G795477
TU905541 lncRNA downstream 106283 33322203 ~ 33322608 (+) True G795560
TU905547 lncRNA downstream 107431 33323351 ~ 33323846 (+) True G795564
TU905551 lncRNA downstream 112195 33328115 ~ 33328354 (+) True G795568
trnag-ucc-93 mRNA upstream 509 33187768 ~ 33187839 (+) True trnag-ucc-93
trnag-ucc-92 mRNA upstream 1778 33186499 ~ 33186570 (+) True trnag-ucc-92
trnag-ucc-91 mRNA upstream 3047 33185230 ~ 33185301 (+) True trnag-ucc-91
trnag-ucc-90 mRNA upstream 4316 33183961 ~ 33184032 (+) True trnag-ucc-90
trnag-ucc-89 mRNA upstream 7136 33181141 ~ 33181212 (+) True trnag-ucc-89
trnag-ucc-116 mRNA downstream 1153 33217073 ~ 33217144 (+) True trnag-ucc-116
trnag-ucc-117 mRNA downstream 2478 33218398 ~ 33218469 (+) True trnag-ucc-117
trnag-ucc-118 mRNA downstream 3803 33219723 ~ 33219794 (+) True trnag-ucc-118
trnag-ucc-119 mRNA downstream 5479 33221399 ~ 33221470 (+) True trnag-ucc-119
trnag-ucc-120 mRNA downstream 9548 33225468 ~ 33225539 (+) True trnag-ucc-120
TU904694 other upstream 600960 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 685599 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 685993 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1063612 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 905502 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1340011 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2149068 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3097209 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3818498 37034418 ~ 37035918 (+) True G799578

Expression Profile