RNA id: TU905405



Basic Information


Item Value
RNA id TU905405
length 296
lncRNA type read_through
GC content 0.48
exon number 2
gene id G795447
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33231075 ~ 33232779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcgttgtacttggaagtcagaattgctcctacattctgcaggttatctaaaataataaatgttgtgcgacgttgaaccaacaagtgtatatcaaaatagatttgcagtcccatcgccaaaaccattcagccaccttgtcctgcgcccaagaggtgataatcggcgttccgaccagtggcccaagatctgcctgtctgagattgctcaaggatctgcaaaagggctcatccgggatttgaacccgggacctctcgcaccctaagcgagaatcatacccctagaccaacgagccttat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU905402 lncRNA upstream 15155 33188348 ~ 33215920 (+) False G795445
TU905398 lncRNA upstream 87402 33143381 ~ 33143673 (+) True G795442
TU905392 lncRNA upstream 107844 33116207 ~ 33123231 (+) False G795438
TU905393 lncRNA upstream 107844 33116207 ~ 33123231 (+) False G795438
TU905394 lncRNA upstream 107844 33116207 ~ 33123231 (+) True G795438
TU905447 lncRNA downstream 18242 33251021 ~ 33316895 (+) True G795477
TU905541 lncRNA downstream 89424 33322203 ~ 33322608 (+) True G795560
TU905547 lncRNA downstream 90572 33323351 ~ 33323846 (+) True G795564
TU905551 lncRNA downstream 95336 33328115 ~ 33328354 (+) True G795568
TU905613 lncRNA downstream 158553 33391332 ~ 33391805 (+) True G795617
trnag-ucc-124 mRNA upstream 68 33230936 ~ 33231007 (+) True trnag-ucc-124
trnag-ucc-123 mRNA upstream 1393 33229611 ~ 33229682 (+) True trnag-ucc-123
trnag-ucc-122 mRNA upstream 2718 33228286 ~ 33228357 (+) True trnag-ucc-122
trnag-ucc-121 mRNA upstream 4127 33226877 ~ 33226948 (+) True trnag-ucc-121
trnag-ucc-120 mRNA upstream 5536 33225468 ~ 33225539 (+) True trnag-ucc-120
trnag-ucc-126 mRNA downstream 212 33232991 ~ 33233062 (+) True trnag-ucc-126
trnag-ucc-127 mRNA downstream 1621 33234400 ~ 33234471 (+) True trnag-ucc-127
trnag-ucc-128 mRNA downstream 3029 33235808 ~ 33235879 (+) True trnag-ucc-128
trnag-ucc-129 mRNA downstream 4437 33237216 ~ 33237287 (+) True trnag-ucc-129
trnag-ucc-130 mRNA downstream 5845 33238624 ~ 33238695 (+) True trnag-ucc-130
TU904694 other upstream 643687 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 728326 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 728720 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1106339 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 888643 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 1323152 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 2132209 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 3080350 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3801639 37034418 ~ 37035918 (+) True G799578

Expression Profile