RNA id: TU905827



Basic Information


Item Value
RNA id TU905827
length 355
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G795820
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33697803 ~ 33698157 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttgagtattgattataaacaacgtttgccatgtttctgtcgatattatggagctaatttgaaatattttcggcgttgtcgtgaccgcaatttccagtcgatttctcagccaaacgtgaagaacaaatggagctatttcaccaacaaaaataatattttgggaaaaaaggaaagaaggtaaattaattataatGGAGTTTATAGCTCTTGGACATATTTATAGTTTAAACCACAGAAGAGAAAGTTGAATTGAGGCAGGACAAATTATGGGGAGCGGGGGAATAAACTctagtgaggaagaggaagaggttcAGGATTCTGTTAATACCTCTTATGGCTGcgatccctgtacagg

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU905825 lncRNA upstream 1582 33696006 ~ 33696221 (+) True G795818
TU905820 lncRNA upstream 5842 33691756 ~ 33691961 (+) True G795813
TU905814 lncRNA upstream 8773 33688399 ~ 33689030 (+) False G795810
TU905816 lncRNA upstream 8773 33688489 ~ 33689030 (+) True G795810
TU905790 lncRNA upstream 14216 33635525 ~ 33683587 (+) True G795786
TU905726 lncRNA downstream 1670 33699827 ~ 33700300 (+) True G795725
TU905727 lncRNA downstream 7117 33705274 ~ 33705512 (+) True G795726
TU905805 lncRNA downstream 9664 33707821 ~ 33708370 (+) True G795801
TU905804 lncRNA downstream 14298 33712455 ~ 33712956 (+) True G795800
TU906062 lncRNA downstream 18407 33716564 ~ 33717275 (+) True G796035
XM_021615472.2 mRNA upstream 11772 33549171 ~ 33686031 (+) True LOC110531945
XM_021615469.2 mRNA upstream 309837 33361262 ~ 33387966 (+) False LOC110531943
XM_036987834.1 mRNA downstream 165027 33863184 ~ 33925784 (+) False LOC110531947
XM_021615483.2 mRNA downstream 165028 33863185 ~ 33925783 (+) False LOC110531947
XM_021615485.2 mRNA downstream 165028 33863185 ~ 33925783 (+) False LOC110531947
XM_036987832.1 mRNA downstream 165029 33863186 ~ 33925780 (+) False LOC110531947
XM_036987833.1 mRNA downstream 165029 33863186 ~ 33925780 (+) True LOC110531947
TU904694 other upstream 1110415 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 1195054 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 1195448 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1573067 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 423265 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 857774 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 1666831 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 2614972 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 3336261 37034418 ~ 37035918 (+) True G799578

Expression Profile