RNA id: TU906057


Basic Information

Item Value
RNA id TU906057
length 958
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G796031
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33712165 ~ 33713122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacatttgacatgtttctgttgaCATTATGagttggaatttccgtctgcgttgtcgtgaacgctctttcctgtggatttctgaacataacgcgacaaacaaacgtcggTATTTTGGGTATGAAAATaatctttattgaacaaaaggaacatttgctgtgtaactgggagcctcgtgagtgaaaacatcagaAGAGCATCAAAGGAAAAccgttaatttgattgcttttctgattttcgtgaccaagcttcctgatgctaagtgtacataatgctatgctaggctatcgattaacttacacaaacgcttggattgttttcgctgtaaagcataatttcaaaatctgagacgacagggtgatttacaaaaggctaagctgtgttttcctatattgcacttgtgatttcatgaatatgaatattttctagtaatagtatttgactgttgcgctatgcagcgttgctgatgacaattatcctggATCTGGGAGGGGTGGTTCAAAGAGGTTAACAATTCAtatatgtgttcattaaccaattcaattaaaatcactctgtctgtttctaaggatttgtaagatccttatttgcataaaatagacagcaGCATTTATTCTCGAGAGCGCTGGTCATAGAACCATGTACAACAGTCTATATATCACATAAGACGTCATAGGTTTTAAaatgcctctcctcctctcgaccAGGACAAAAGAGGTTCAAAAGTTCATTCCAACTCACTAGCACACATACCTGGCACACTATATCTGGATTagcctgtctacgatactggttcccaattgggaatcaaccctcccacgtgcagctggaacggtggcgcatggaacgcaaaaatattcttaaaaatatttaacctccacacattaacaagtccaatagctcaaattaaagataaacatcttgttcatttagccagcaagtcagatttctaaaatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU906056 lncRNA downstream 1247 33708803 ~ 33710918 (-) True G796030
TU906053 lncRNA downstream 11424 33700367 ~ 33700741 (-) True G796027
TU906052 lncRNA downstream 11914 33699962 ~ 33700251 (-) True G796026
TU906051 lncRNA downstream 12215 33699617 ~ 33699950 (-) True G796025
TU906044 lncRNA downstream 16644 33695130 ~ 33695521 (-) True G796018
TU906058 lncRNA upstream 59 33713181 ~ 33713386 (-) True G796032
TU906091 lncRNA upstream 16760 33729882 ~ 33730221 (-) True G796056
TU906093 lncRNA upstream 17970 33731092 ~ 33731316 (-) True G796058
TU906298 lncRNA upstream 110378 33823500 ~ 33826292 (-) True G796245
TU906311 lncRNA upstream 130885 33844007 ~ 33849125 (-) True G796258
XR_005053227.1 mRNA downstream 369320 33341851 ~ 33342845 (-) False LOC118966028
XM_036987824.1 mRNA downstream 393176 33283869 ~ 33318989 (-) False LOC110531942
XM_036987825.1 mRNA downstream 393206 33283869 ~ 33318959 (-) False LOC110531942
XM_036987823.1 mRNA downstream 393207 33283869 ~ 33318958 (-) False LOC110531942
trnap-agg-56 mRNA downstream 478744 33233350 ~ 33233421 (-) True trnap-agg-56
XM_036987827.1 mRNA upstream 66326 33779448 ~ 33801124 (-) False LOC110531946
XM_036987828.1 mRNA upstream 66326 33779448 ~ 33801124 (-) False LOC110531946
XM_021615480.2 mRNA upstream 66326 33779448 ~ 33801467 (-) False LOC110531946
XM_036987830.1 mRNA upstream 66326 33779448 ~ 33801467 (-) False LOC110531946
XM_021615475.2 mRNA upstream 66326 33779448 ~ 33801476 (-) False LOC110531946
TU904054 other downstream 1683897 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 2049967 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 2293192 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 2308296 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 3354201 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 337937 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 1156833 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 1641097 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 1672731 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 1778904 35492026 ~ 35521332 (-) True LOC118966032

Expression Profile