RNA id: TU906358


Basic Information

Item Value
RNA id TU906358
length 2279
lncRNA type intronic
GC content 0.41
exon number 2
gene id G796305
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 33908489 ~ 33910834 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actctgtgtgcaataatagtgtttaacatgatttttgaatgactacctcatctctgtaccccacacatacaattatctgtaaggtccctcagtcaaataAGAGATcagtcaaacacagattcaattaCAAAGAccggggaggttttccaatgccctgcaaagaagagcacctattggtagatggtaaAAAAATaagctgacattgaatatccctttgagcatggtgaagttattaattacacccagttactacaaagatataggtgtccttcctaactcagttgccagagaggaaggaaaccgcttggGATTTCACCTTGAGGCCAATGAAGACTTTAATACAATtatacagtttaatggctgtgataggagaaaactgaggatgtatctacaacattgcagttacttcacaatactaacctaatgaacagagtgaaagaaggaagcctgtacatacaATGTTTGCAACAAGTCACTAAAGTAATTCTGCAAAAAATGGGGCAAggaattaactttttgtcctgaataaaatgttatatttggggcaaatccaatacaactattacgtttcaggtaagacccagatgcagacaaagttgaagtaacaacagtttattaatccaacaggggcaggcaaaagacacgtcaagggcagtcaggggtcagtaatccagataggtggggaaaaggtacaggatggcaggcaggctcagggtaggggtaggcagaggtcagtaatccagataggtggggcaaaggtataGGATGGCAGGCAAGCTCAAGATCAGGGCAGACAGTGAGGTCAACACCGGGAAAACaagaaaacaggaacaatcgagaTACAGGAGCAGAGGAAaaaacactggtaggcttgacgaactggcaacagacaaacagagaacacaggtataaatacacaggggacaatggggaagatgggcgacacctggaggtgggtggagacaatcacaaagacaggtgaaacagatcagggtgtgacaacacattactgagtaccactcacacatattttcaagcatattagtgactgcatcatgttatgggcatgtttgtaatcgttaaggactggggagtttttcaggataaaaaagaaacggactggagttaagcacagacaaaatcctaggggaaaacctgattcagtctgctttccaccagacaccgggagaggaattcaccttccagcaggacaataacccaaaccACAAGACCAATTCTACACTGGTGTTACAGTTTTGATtgaaatctacttgaaaatctatggcaagacctgaaaatcaTTGTCTAGCAAGGATCAACAATCAATTTGAAAGAGCCTAAGAATtcaaaaataattataattatgtgaaaatgttgcacaatctaggtgtggaaaactcttagagacttaccctgaaagacacagctgtaattgctgccaaatgtgacCGACTgccttgattcggtcttatgtagcaacatttaaaacattttttttttacattgcataaaagcagagacagagatacaacatggtatatcatacacaggatttgaggaacaatgggaaagtaattctactTTGAAAGTTGATGAACTTGTAACCTCATCGTTCACACGCTCTTAAGCTTtaaccccacccatctctttatggGTTAATCCGAGCATTCTGTCCTAACAACAACAGGCAAGCACcgaagctaactggctaacgttggctagcttcttccagacacaaatgagagtacagctcactgaccattttactcaccctagcagagctggttaggttgttatgttatccagagcgctGGTGACCacaactgtgctgctggaaacaatttacactgacaccggccatattcaatgagtgttgagcgttcgtaaattcgtaatttattctgtgctctggcacacgcagacaagagtgctctggaatctgagtagatagccagagtgaatttaccagcTATGAATATCAACAGCTGTCGCaatgacattctattgaaatggttactggcatagtggagtcttttgttaagacatgtagctaagCCAGCTAGGTTAACAATGAACCATAAtaccaactcatgacgttactaccctgcatgaatctgcaggtagctaactaaCCAGgatcaatgttagctagctaaatttagGCTATAAcaagcaaagcaaatggctctgagaaaGGAATAATACGATCATACAGCTAgcgtagctagttagctaacagtacAATTGACCTTAAAATAAAAAAGACTTTCTGTCAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU906357 lncRNA downstream 91 33907298 ~ 33908398 (-) True G796304
TU906311 lncRNA downstream 59364 33844007 ~ 33849125 (-) True G796258
TU906298 lncRNA downstream 82197 33823500 ~ 33826292 (-) True G796245
TU906093 lncRNA downstream 177173 33731092 ~ 33731316 (-) True G796058
TU906091 lncRNA downstream 178268 33729882 ~ 33730221 (-) True G796056
TU906830 lncRNA upstream 151547 34062381 ~ 34062646 (-) True G796749
TU906832 lncRNA upstream 153651 34064485 ~ 34064730 (-) True G796751
TU906833 lncRNA upstream 153931 34064765 ~ 34065000 (-) True G796752
TU906848 lncRNA upstream 166773 34077607 ~ 34077811 (-) True G796762
TU906864 lncRNA upstream 186455 34097289 ~ 34097523 (-) True G796777
XM_036987831.1 mRNA downstream 106990 33779448 ~ 33801499 (-) True LOC110531946
XM_021615481.2 mRNA downstream 107010 33779448 ~ 33801479 (-) False LOC110531946
XM_021615476.2 mRNA downstream 107013 33779448 ~ 33801476 (-) False LOC110531946
XM_021615487.2 mRNA upstream 29601 33940435 ~ 33999008 (-) False LOC110531948
XM_021615488.2 mRNA upstream 29601 33940435 ~ 33999008 (-) False LOC110531948
XM_021615489.2 mRNA upstream 29601 33940435 ~ 33999008 (-) False LOC110531948
XM_021615490.2 mRNA upstream 29601 33940435 ~ 33999008 (-) False LOC110531948
XM_021615491.2 mRNA upstream 29601 33940435 ~ 33999008 (-) False LOC110531948
TU904054 other downstream 1880221 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 2246291 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 2489516 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 2504620 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 3550525 30315310 ~ 30357964 (-) True G792267
TU906814 other upstream 140225 34051059 ~ 34057549 (-) True G796733
TU907768 other upstream 959121 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 1443385 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 1475019 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 1581192 35492026 ~ 35521332 (-) True LOC118966032

Expression Profile