RNA id: TU906814



Basic Information


Item Value
RNA id TU906814
length 535
RNA type TUCP
GC content 0.51
exon number 5
gene id G796733
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34051059 ~ 34057549 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGGGAAATAATGGCTGGATCACTCGTTCTCCTCGCTGCGGAGTCTGGCATTGGGGTTGGTGATCTTGATGGCCAGCTGGGCTGCTCTCTCCACAATCAGCTTCCTGTTCTTGGAAGACACGTTGTGGGCAATCTCTGCAGCATGGGTCTTGTTGCTCATCATGAGGACCTCCAGCTCCTTGATGTTGTGCACCAGGAACTTCCTGAAGCCAGAGGGCAGCATGTGCTTAGTCTTCTTGTTGCTACCATAACCGATGTTGGGCATCAGCATCTGGCCCTTAAACCGCCTGCGGACTCTGTTGTCAATACCCCTGGGCTTACGCCAGCTTTTCGTGACCTTGACATATCTGTCAGACTGATGGCGAATGAACTTCTTAACCCTCTTCTTGACGATCTTCGGCTTGGTAAGAGGTCGGAGGGCTGCCATGGTGACCTGTGTAATTTTAGGAAGGGAGTCAGCAACGGCCGAAAGGAAAGGACTTCCGTTAAGGACCGCAAGGTGATATGGGCAAAGACTCGacttcaaaactcaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU906358 lncRNA downstream 140225 33908489 ~ 33910834 (-) True G796305
TU906357 lncRNA downstream 142661 33907298 ~ 33908398 (-) True G796304
TU906311 lncRNA downstream 201934 33844007 ~ 33849125 (-) True G796258
TU906298 lncRNA downstream 224767 33823500 ~ 33826292 (-) True G796245
TU906093 lncRNA downstream 319743 33731092 ~ 33731316 (-) True G796058
TU906830 lncRNA upstream 4832 34062381 ~ 34062646 (-) True G796749
TU906832 lncRNA upstream 6936 34064485 ~ 34064730 (-) True G796751
TU906833 lncRNA upstream 7216 34064765 ~ 34065000 (-) True G796752
TU906848 lncRNA upstream 20058 34077607 ~ 34077811 (-) True G796762
TU906864 lncRNA upstream 39740 34097289 ~ 34097523 (-) True G796777
XM_021615493.2 mRNA downstream 16569 34006952 ~ 34034490 (-) True LOC110531949
XM_021615492.2 mRNA downstream 16570 34006952 ~ 34034489 (-) False LOC110531949
XM_036987839.1 mRNA downstream 16817 34006952 ~ 34034242 (-) False LOC110531949
XM_036987838.1 mRNA downstream 17555 34006952 ~ 34033504 (-) False LOC110531949
XM_021615494.2 mRNA downstream 18370 34006952 ~ 34032689 (-) False LOC110531949
XM_036987842.1 mRNA upstream 76021 34133570 ~ 34163160 (-) False LOC110531953
XM_021615500.2 mRNA upstream 76021 34133570 ~ 34163176 (-) True LOC110531953
XM_021614394.2 mRNA upstream 302429 34359978 ~ 34361763 (-) False LOC110531153
XM_036987858.1 mRNA upstream 304621 34362170 ~ 34377148 (-) False LOC110531957
XM_036987855.1 mRNA upstream 304621 34362170 ~ 34383316 (-) False LOC110531957
TU904054 other downstream 2022791 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 2388861 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 2632086 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 2647190 31403482 ~ 31403869 (-) True G793472
TU901919 other downstream 3693095 30315310 ~ 30357964 (-) True G792267
TU907768 other upstream 812406 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 1296670 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 1328304 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 1434477 35492026 ~ 35521332 (-) True LOC118966032
TU909208 other upstream 1919873 35977422 ~ 35979115 (-) True LOC110531979

Expression Profile