RNA id: TU906530



Basic Information


Item Value
RNA id TU906530
length 246
lncRNA type intronic
GC content 0.38
exon number 1
gene id G796463
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34069592 ~ 34069837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTCAATTCTGTTCAGGAAATGAATAAATTATAATTTAGGAATCTAGAAAATTGCCCTTTTGTGTCAAGATTTACATTTTTAATTCATCCACTGAATTCCACCCAATTATGTTGAATGCACTGCGTTAATATGGAGCTAACCCCATCCATGTCATCATTaccaaagaggagagggagggaaagagacagagatggagagatagaaaaGGCAGCGAAAGAGTTAGTCAGAATGAGCGAGAAAGAGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU906529 lncRNA upstream 270 34069110 ~ 34069322 (+) True G796462
TU906523 lncRNA upstream 6948 34062441 ~ 34062644 (+) True G796456
TU906507 lncRNA upstream 26498 34042436 ~ 34043094 (+) True G796441
TU906457 lncRNA upstream 33824 34035400 ~ 34035768 (+) True G796394
TU906389 lncRNA upstream 115759 33952831 ~ 33953833 (+) True G796331
TU906549 lncRNA downstream 31811 34101648 ~ 34101847 (+) True G796481
TU906557 lncRNA downstream 40299 34110136 ~ 34110359 (+) True G796489
TU906585 lncRNA downstream 110332 34180169 ~ 34180461 (+) True G796517
TU906627 lncRNA downstream 231651 34301488 ~ 34301885 (+) True G796558
TU906671 lncRNA downstream 252751 34322588 ~ 34323051 (+) True G796601
XM_021614371.2 mRNA upstream 12022 34052296 ~ 34057570 (+) False rl32
NM_001160636.2 mRNA upstream 12022 34052311 ~ 34057570 (+) True rl32
XM_021615485.2 mRNA upstream 143809 33863185 ~ 33925783 (+) False LOC110531947
XR_002474782.2 mRNA downstream 211504 34281341 ~ 34298265 (+) True LOC110531954
XM_021615501.1 mRNA downstream 274518 34344355 ~ 34349297 (+) True LOC110531955
XR_005053228.1 mRNA downstream 316047 34385884 ~ 34392962 (+) True LOC118966029
XM_036989281.1 mRNA downstream 540453 34610290 ~ 34612491 (+) True LOC110531960
XM_021615507.2 mRNA downstream 573082 34642919 ~ 34682784 (+) True LOC110531961
TU904694 other upstream 1482204 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 1566843 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 1567237 32501847 ~ 32502355 (+) True G794892
TU904136 other upstream 1944856 32122682 ~ 32124736 (+) False zgc:112271
TU906563 other downstream 51585 34121422 ~ 34121740 (+) True G796495
TU907166 other downstream 486094 34555931 ~ 34556622 (+) True G797056
TU908119 other downstream 1295151 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 2243292 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 2964581 37034418 ~ 37035918 (+) True G799578

Expression Profile