RNA id: TU906875



Basic Information


Item Value
RNA id TU906875
length 202
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G796788
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34110875 ~ 34111076 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGTGGTCACCACTTTGACGAGGGGAGGCAGGGTAAATTCTCAAACTATTATAAAACAATGTTATGAATTCACATGGAAAAAAACAATCCACATACGTGAGCTCTTGTGCTCCTTACTCCGCTGGCATCTCTTGTGTGTCGTGCTGTGGGGGCTTGGGGGGGCGACGGGGGGGATGGGGCAGGGCAGGGTGCTGCTGTACCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU906874 lncRNA downstream 622 34109998 ~ 34110253 (-) True G796787
TU906872 lncRNA downstream 3169 34107443 ~ 34107706 (-) True G796785
TU906864 lncRNA downstream 13352 34097289 ~ 34097523 (-) True G796777
TU906848 lncRNA downstream 33064 34077607 ~ 34077811 (-) True G796762
TU906833 lncRNA downstream 45875 34064765 ~ 34065000 (-) True G796752
TU906881 lncRNA upstream 6243 34117319 ~ 34117540 (-) True G796794
TU906883 lncRNA upstream 8585 34119661 ~ 34119863 (-) True G796796
TU906884 lncRNA upstream 8897 34119973 ~ 34120369 (-) True G796797
TU906896 lncRNA upstream 61434 34172510 ~ 34172777 (-) True G796809
TU906901 lncRNA upstream 67456 34178532 ~ 34178750 (-) True G796814
XM_021615493.2 mRNA downstream 76385 34006952 ~ 34034490 (-) True LOC110531949
XM_021615492.2 mRNA downstream 76386 34006952 ~ 34034489 (-) False LOC110531949
XM_036987839.1 mRNA downstream 76633 34006952 ~ 34034242 (-) False LOC110531949
XM_036987838.1 mRNA downstream 77371 34006952 ~ 34033504 (-) False LOC110531949
XM_021615494.2 mRNA downstream 78186 34006952 ~ 34032689 (-) False LOC110531949
XM_036987842.1 mRNA upstream 22494 34133570 ~ 34163160 (-) False LOC110531953
XM_021615500.2 mRNA upstream 22494 34133570 ~ 34163176 (-) True LOC110531953
XM_021614394.2 mRNA upstream 248902 34359978 ~ 34361763 (-) False LOC110531153
XM_036987858.1 mRNA upstream 251094 34362170 ~ 34377148 (-) False LOC110531957
XM_036987855.1 mRNA upstream 251094 34362170 ~ 34383316 (-) False LOC110531957
TU906814 other downstream 53326 34051059 ~ 34057549 (-) True G796733
TU904054 other downstream 2082607 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 2448677 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 2691902 31418455 ~ 31418973 (-) True G793489
TU903165 other downstream 2707006 31403482 ~ 31403869 (-) True G793472
TU907768 other upstream 758879 34869955 ~ 34875879 (-) True G797605
TU908405 other upstream 1243143 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 1274777 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 1380950 35492026 ~ 35521332 (-) True LOC118966032
TU909208 other upstream 1866346 35977422 ~ 35979115 (-) True LOC110531979

Expression Profile