RNA id: TU907317



Basic Information


Item Value
RNA id TU907317
length 725
lncRNA type intronic
GC content 0.39
exon number 2
gene id G797201
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34745916 ~ 34776053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTCAAAAGTGTCCATTACTAATTTTctattcagttgaagtcggatatttacacacacttaggttgtagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaaactatagttttgtcaaatcggttaggacatctactttgtgcatgtcacaagtaatttttccaacaattgtttacagacagattatttcacttataattcactgtatcacaattccagtgggtcagaagtgtacatacactaagctgactgtgcctttaaaaagctttgaaaattccagaaatgtatgtcatggctttagaagcttctgataggctaattgacataatttgagtcaattggaggtgtacctgtggttgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaataaatcagccaagacctcagaaaaataattgtagacctccacatgtctggttcatccttgggagcaatttccaaattccttaaggtaccacgttcatctgtaaaagcaacagtaagcaagtataaacaccaagggacctcgcagccgtcataccggtcaggaaggagacgcgttctgtctcctagagatgaacatgctttggtgtgaaaagtgcaaatcaatcccagaacaacagcaatggaccttgtgaagatgctggaggaaacaggtacaaaaatatccatatccaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU907245 lncRNA upstream 130640 34614402 ~ 34615276 (+) True G797132
TU907226 lncRNA upstream 141602 34599357 ~ 34604314 (+) True G797115
TU907212 lncRNA upstream 155255 34590458 ~ 34590661 (+) True G797101
TU907191 lncRNA upstream 168608 34576845 ~ 34577308 (+) True G797080
TU907167 lncRNA upstream 185149 34560389 ~ 34560767 (+) True G797057
TU907410 lncRNA downstream 42112 34818165 ~ 34824262 (+) True G797271
TU907450 lncRNA downstream 92254 34868307 ~ 34875882 (+) False G797309
TU907451 lncRNA downstream 99007 34875060 ~ 34875882 (+) True G797309
TU907455 lncRNA downstream 105947 34882000 ~ 34922396 (+) True G797312
TU907462 lncRNA downstream 137602 34913655 ~ 34915985 (+) False G797319
XM_021615507.2 mRNA upstream 63132 34642919 ~ 34682784 (+) True LOC110531961
XM_036989281.1 mRNA upstream 133425 34610290 ~ 34612491 (+) True LOC110531960
XR_005053228.1 mRNA upstream 352954 34385884 ~ 34392962 (+) True LOC118966029
XM_021615501.1 mRNA upstream 396619 34344355 ~ 34349297 (+) True LOC110531955
XR_002474782.2 mRNA upstream 447651 34281341 ~ 34298265 (+) True LOC110531954
XM_036986939.1 mRNA downstream 170087 34946140 ~ 35104382 (+) True LOC110531155
XM_036987863.1 mRNA downstream 439818 35215871 ~ 35360678 (+) True LOC110531964
XR_002474784.2 mRNA downstream 623626 35399679 ~ 35403549 (+) False LOC110531967
XR_002474785.2 mRNA downstream 623626 35399679 ~ 35403549 (+) False LOC110531967
XR_002474786.2 mRNA downstream 623626 35399679 ~ 35403549 (+) False LOC110531967
TU907166 other upstream 189294 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 624176 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 2158528 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 2243167 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 2243561 32501847 ~ 32502355 (+) True G794892
TU908119 other downstream 588935 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 1537076 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 2258365 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 2791192 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 3294163 38070216 ~ 38071433 (+) False G800834

Expression Profile