RNA id: TU907451



Basic Information


Item Value
RNA id TU907451
length 483
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G797309
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 34868307 ~ 34875882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggagacagggtgaaaggaaaggacagagacacaacatgacaatacatgacacttctcctattcctcctacacctcctccgcattctctctgagtctcctcctactcctattcctccaccttctacattctctctgagtctcctcgtattcctcctccacctcctccgcattctctctgagtctcctcctactcctattcctcctccaccacaacctcttccgcattatctctgagtctcctcctaatCCTATTCctgctccacctcctccgcattctctctgagtctcctcgtattcctcctccacctcctctgcattctctctgagtctcctcctactcctattcctcctccgcattctctctgagccaactcctattcctcctacacctcctccgcattctctctgagtctcctcctactcctattccttctacacctcctccgcattctctctgagtctcttccTACtctacctcctcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU907355 lncRNA upstream 7493 34770063 ~ 34867567 (+) True G797225
TU907410 lncRNA upstream 50798 34818165 ~ 34824262 (+) True G797271
TU907317 lncRNA upstream 99007 34745916 ~ 34776053 (+) True G797201
TU907245 lncRNA upstream 259784 34614402 ~ 34615276 (+) True G797132
TU907226 lncRNA upstream 270746 34599357 ~ 34604314 (+) True G797115
TU907455 lncRNA downstream 6118 34882000 ~ 34922396 (+) True G797312
TU907462 lncRNA downstream 37773 34913655 ~ 34915985 (+) False G797319
TU907464 lncRNA downstream 37773 34913655 ~ 34915985 (+) True G797319
TU907471 lncRNA downstream 58106 34933988 ~ 34937847 (+) False G797326
TU907472 lncRNA downstream 59675 34935557 ~ 34937847 (+) True G797326
XM_021615507.2 mRNA upstream 192276 34642919 ~ 34682784 (+) True LOC110531961
XM_036989281.1 mRNA upstream 262569 34610290 ~ 34612491 (+) True LOC110531960
XR_005053228.1 mRNA upstream 482098 34385884 ~ 34392962 (+) True LOC118966029
XM_021615501.1 mRNA upstream 525763 34344355 ~ 34349297 (+) True LOC110531955
XR_002474782.2 mRNA upstream 576795 34281341 ~ 34298265 (+) True LOC110531954
XM_036986939.1 mRNA downstream 70258 34946140 ~ 35104382 (+) True LOC110531155
XM_036987863.1 mRNA downstream 339989 35215871 ~ 35360678 (+) True LOC110531964
XR_002474784.2 mRNA downstream 523797 35399679 ~ 35403549 (+) False LOC110531967
XR_002474785.2 mRNA downstream 523797 35399679 ~ 35403549 (+) False LOC110531967
XR_002474786.2 mRNA downstream 523797 35399679 ~ 35403549 (+) False LOC110531967
TU907166 other upstream 318438 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 753320 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 2287672 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 2372311 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 2372705 32501847 ~ 32502355 (+) True G794892
TU908119 other downstream 489106 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 1437247 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 2158536 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 2691363 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 3194334 38070216 ~ 38071433 (+) False G800834

Expression Profile