RNA id: TU907841


Basic Information

Item Value
RNA id TU907841
length 2964
lncRNA type intronic
GC content 0.36
exon number 4
gene id G797667
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35029215 ~ 35044172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTATGACATGGCAGATCTCTAgtaatgctgaagtgttgtatcatcataaacagtttttTTGGCAATGTTTAGGGATTATTATGACATGGCACATCTCTAGTAATGCTGAACTGTTGTttcatcataaacagttttctggcaatgtttagggatgactGTGACATGCCACATCTCTAATAATTCTGAactgttgtatcatcataaacagtttcctggcaatgtttagggataactatgacatgacacatctctaataatgctgAACTGTTGTACCATCACAAACAGTTTCCTGGCAATGTTTAAGGATAACTATGCATGGCACATCTCTAATTatgctgaagtgttgtatcatcataaacagttttctgCCAATGTTTAGGGATGACTGTGACATGCCACATCTCTAATAATTCtgaagtgttgtatcatcataaacagttttctggcaatgATTAGGGATTACTATGACATCATGgcacatctctaataatgctgaagtgttgtatcatcataaacagtttcctggcaatgtttagggataACTATGCATGGCACATCTCTAATTATGCTGAACTGTTGTATCATCAAaaacagttttctggcaatgATTAGGGATTACTATGACATGGCACTTCTCTAgtaatgctgaagtgttgtatcatcataaacacATAGTACAGGTGtctggcaatgtttagggatgactatgacatCATTGCACATCTaataatgctgaagtgttgtatcatcataaacagttgtctggcaatgtttagggatgactatgacatGGCAGATCTCTAgtaatgctgaagtgttgtatcatcataaacagttttctggTAATGTTTAGGGATGATTATGACATGgcacatctctaataatgctgaagtgttgtaccatcataaacagttttttggcaatgtttagggatgactatgacatggcacatctctagtaatgctgaagtgttgtatcatcataaacagttttctaGCAACGTTTAGAGATGACTATGACATCATTGCAAATCTCTaataatgctgaagtgttgtaccatcataaacagttttctggcaatgtttagggataGCTATGATATGGCAGATCTCTAGTAATGCTGAAGTGTTCTATCATCATAAAAGgttttctggcaatgtttagggatgactatAACATGGCAGATCTCTATTAATGCTGAACggttgtatcatcataaacagttttctggcaatgtttagAGATGCTTATGACATGgcacatctctaataatgctgaagtgttgtacCATCATAAACAATTTACTGGTTATGTTTACGGATGCCTATGACATACGGgcacatctctaataatgctggagtgttgtatcatcataaacagttttctggcaacgtttagggatgactatgacatCATTGCAAATCTCTaataatgctgaagtgttgtaaCATCAAACAGTTTTCTGCAAATGTTTAGCGATGACTATGACATCATGGCACATCTCTAATAATGAtgaagtgttgtatcatcataaacagttttctggcaatgtttagggatgactatgacatcatggcacatctctaataatgctgaagtgttgtatcatcataaacaaTTTTCTGGCAACGTTTAGGGATGACTTTGACATGGCAAATATATATTAATGCTGAactgttgtatcatcataaaccgttttctggcaatgtttagggatgactatgacataattgcacatctctaataatgctgaagtgttgtaaCATCAACCAGTTTTCTGAAAATGTTTAGCGATGACTATGACATCAATGCACATCTCTAATAATGATGAAGTGTTGTACCATCATAAACAGTTTTttggcaatgtttagggatgactatgacatGGCACATCTCTAGTAATGCTGAACTGTTATTCAATCGtaaacagttttctggcaatgtttagggataCTTATGACATGGCAGATCTCTATTAATGCTgaaatgttgtattatgtttagGGATAGCTATGATATGGCAGATCTCTAgtaatgctgaagtgttgtatcaCCATAAACAGTTTCCTGGCAATGATTAGGGATAACTATGACATCATGACACATCTAATAATGCTGTAGTGTTGTATCACcataaacagttttctggcaatgtttagggataGCTATGATATGGCAGATCTCTAGTAATGCTGAAGTGTTctatcatcataaacagttttctggcaatgtttagggatgactatAACATGGCAGATCTCTATTAATGCTGAACggttgtatcatcataaacagttttctggcaatgtttagAGATGCTTATGACATGgcacatctctaataatgctgaagtgttgtacCATCATAAACAATTTACTGGTTATGTTTACGGATGCCTATGACATCATTGCAAATCTCTaataatgctgaagtgttgtaaCATCAAACAGTTTTCTGCAAATGTTTAGCGATGACTATGACATCATGGCACATCTCTAATAATGATGAAGTGTTGTAccatcataaacagttttctggcaatgtttagCGATACTTATGACATGGCAGATCTCTATTAATGCTgaaatgttgtattatgtttagGGATTATTATGACATGGCAGATCTCTAgtaatgctgaagtgttgtatcaCCATAAACAGTTTCCTGGCAATGATTAGGGATAACTATGACATCATGACACATCTAATAATGCTGTAGTGTTGTATCATTataaacagttttctggcaatgtttagggataGCTATGATATGGCAAATCTCTAGTAATGCTGATGTGTTctatcatcataaacagttttctggcaatgtttagggatgactatAACATGGCAGATCTCTATTAATGCTGAACggttgtatcatcataaacagttttctggcaatgtttagAGATGCTTATGACATGgcacatctctaataatgctgaagtgttgtacC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU907832 lncRNA downstream 19166 35008728 ~ 35010049 (-) True G797660
TU907777 lncRNA downstream 89759 34923378 ~ 34939456 (-) False G797608
TU907772 lncRNA downstream 90380 34932480 ~ 34938835 (-) True G797608
TU907775 lncRNA downstream 90812 34920986 ~ 34938403 (-) False G797608
TU907779 lncRNA downstream 91402 34914791 ~ 34937813 (-) False G797609
TU907886 lncRNA upstream 63151 35100502 ~ 35101902 (-) True G797706
TU907887 lncRNA upstream 68478 35105829 ~ 35108729 (-) True G797707
TU907923 lncRNA upstream 98190 35135541 ~ 35135846 (-) True G797742
TU907932 lncRNA upstream 106204 35143555 ~ 35143839 (-) True G797751
TU907936 lncRNA upstream 110072 35147423 ~ 35147632 (-) True G797755
XM_036987860.1 mRNA downstream 226381 34729334 ~ 34802834 (-) True LOC110531962
XM_036987861.1 mRNA downstream 233384 34729334 ~ 34795831 (-) False LOC110531962
XM_021615508.2 mRNA downstream 291931 34729334 ~ 34737284 (-) False LOC110531962
XM_021617143.2 mRNA downstream 307899 34715740 ~ 34721316 (-) True LOC110533011
XM_021615504.2 mRNA downstream 392921 34617500 ~ 34636294 (-) True eif2d
XM_021615510.2 mRNA upstream 326701 35364052 ~ 35372459 (-) True LOC110531965
XM_021615514.2 mRNA upstream 344310 35381661 ~ 35399054 (-) False LOC110531966
XM_021615511.2 mRNA upstream 344311 35381662 ~ 35399558 (-) False LOC110531966
XR_005053231.1 mRNA upstream 457713 35495064 ~ 35521884 (-) False LOC118966032
LOC110531156 mRNA upstream 519516 35556867 ~ 35562538 (-) True LOC110531156
TU907768 other downstream 153336 34869955 ~ 34875879 (-) True G797605
TU906814 other downstream 971666 34051059 ~ 34057549 (-) True G796733
TU904054 other downstream 3000947 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 3367017 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 3610242 31418455 ~ 31418973 (-) True G793489
TU908405 other upstream 316868 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 348502 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 454675 35492026 ~ 35521332 (-) True LOC118966032
TU909208 other upstream 940071 35977422 ~ 35979115 (-) True LOC110531979
TU909355 other upstream 1112987 36150338 ~ 36150637 (-) True G798993

Expression Profile