RNA id: TU907839


Basic Information

Item Value
RNA id TU907839
length 3837
lncRNA type intronic
GC content 0.35
exon number 4
gene id G797667
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35029215 ~ 35044172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GgcacatctctaataatgctgaagtgttgtaacatcaaacagttttctggcaacgtttagggatgactatgacatCATTGCAAATCTCTaataatgctgaagtgttgtaaCATCAAACAGTTTTCTGCAAATGTTTAGCGATGACTATGACATCATGGCACATCTCTAATAATGAtgaagtgttgtatcatcataaacagttttctggcaatgtttagggatgactatgacatcatggcacatctctaataatgatgaagtgttgtatcatcataaacaaTTTTCTGGCAACGTTTAGGGATGACTTTGACATGGCAAATATATATTAATGCTGAactgttgtatcatcataaaccgttttctggcaatgtttagggatgactatgacataattgcacatctctaataatgctgaagtgttgtaaCATCAAACAGTTTTCTGAAAATGTTTAGCGATGACTATGACATCAATGCACATCTCTAATAATGATGAAGTGTTGTACCATCATAAACAGTTTTttggcaatgtttagggatgactatgacatGGCACATCTCTAGTAATGCTGAACTGTTATTCAATCGtaaacagttttctggcaatgtttagggataCTTATGACATGGCAGATCTCTATTAATGCTgaaatgttgtattatgtttagGGATTATTATGACATGGCAGATCTCTAgtaatgctgaagtgttgtatcaCCATAAACAGTTTCCTGGCAATGATTAGGGATAACTATGACATCATGACACATCTAATAATGCTGTAGTGTTGTATCATTataaacagttttctggcaatgtttagggataGCTATGATATGGCAGATCTCTAGTAATGCTGAAGTGTTctatcatcataaacagttttctggcaatgtttagggatgactatAACATGGCAGATCTCTATTAATGCTGAACGtttgtatcatcataaacagttttctggcaatgtttagAGATGCTTTTGACATGgcacatctctaataatgctgaagtgttgtacCATCATAAACAATTTACTGGTTATGTTTACGGATGCCTATGACATACGGgcacatctctaataatgctgaagtgttgtatcatcataaacagttttctggcaacgtttagggatgactatgacatCATTGCAAATCTCTaataatgctgaagtgttgtaaCATCAAACAGTTTTCTGCAAATGTTTAGCGATGACTATGACATCATGGCACATCTCTAATAATGAtgaagtgttgtatcatcataaacagttttctggcaatgtttagggatgactatgacatcatggcacatctctaataatgctgaagtgttgtatcatcataaacagttttctggcaatgtttagggatgactatgacatggcacatctctagtaatgctgaagtgttgtatcatcataaacaaTTTTCTGGCAACGTTCAGGGATGACTTTGACATGGCAAATATATATTAATGCTGAactgttgtatcatcataaaccgttttctggcaatgtttagggatgactatgacataattgcacatctctaataatgctgaagtgttgtaaCATCAAACAGTTTTCTGAAAATGTTTAGCGATGACTATGACATCAATGCACATCTCTAATAATGATGAAGTGTTGTACCATCATAAACAGTTTTttggcaatgtttagggatgactatgacatGGCACATCTCTAGTAATGCTGAAATGTTGAATTATGTTTAGGGATAGCTATGATATGGCAGATCTCTAGTAATGCTGAAGTGTTctatcatcataaacagttttctggcCATGTTTAGGGATGACTATAACATGGCAGATCTCTATTAATGCTGAACggttgtatcatcataaacagttttctggcaatgtttagAGATGCTTATGACATGgcacatctctaataatgctgaagtgttgtacCATCATAAACAATTTACTGGTTATGTTTACGGATGCCTATGACATACGGgcacatctctaataatgctgaagtgttgtatcatcataaacagttttctggcaacgtttagggatgactatgacatCATTGCAAATCTCTaataatgctgaagtgttgtaaCATCAAACAGTTTTCTGCAAATGTTTAGCGATGACTATGACATCAATGCACATCTCTAATAATGATGAAGTGTTGTAccatcataaacagttttctggcaatgtttagggatgactatgacatcatggcacatctctaataatgctTAAGTGTTATAccatcataaacagttttctggcaatgtttagggataACTATGACATCATGgcacatctctaataatgctgaagtgttataccatcataaacagttttctggcaatgtttagggatgactatgacatggcacatctctaataacgctgaagtgttgtatcatcataaacagtttttttggcaatgtttagggatgactatgacatGGCAGATCTCTATTAATGCTGAAATGTTGTGTTATGTTTAGGGATTATTATGACATGGCACATCTCTAGTAATGCTGAACTGTTGTATCATAAATCATAAACAGTTTTTttggcaatgtttagggatgactatgacatggcacatctctaataatgctgaactgttgtatcatcataaacagtttcctggcaatgtttagggataattatgacatggcacatctctagtaatgctgaagtgttctatcatcAAAAACAGATTcctggcaatgtttagggataactatgacatggcacatctctaataatgctgAACTGTTTTTATCATCAAAAACAATTTTCTGGCAATGATTAGGGATTACTATGACATCATGgcacatctctaataatgctgaagtgttgtatcatcataaacagtttcctggcaatgtttagggataACTATGCATGGCACATCTCTAATTATGCTGAACTGTTGTATCATCAAaaacagttttctggcaatgATTAGGGATTACTATGACAAGGCACTTCTCTAgtaatgctgaagtgttgtatcatcataaaaACATAGTACAGGTGtctggcaatgtttagggatgactatgaAATCATTGCACATCTAATAATGCTgaattgttgtatcatcataaacagttttctggcaatgtttagggatgactatgacatGGCACATCTCTAATAACGCTGAAGTGTTGTACCATCATAAACAGTTTCCTGGTTATGTTTAGGGATGATTATGACATGTCACATCTCTAAAAATGCTGAAGTGTTGTATAATCATAAACAGTTTTTttggcaatgtttagggatgactatgacatGGCAGATCTCTATTAATGCTGAAATGTTGTGTTATGTTTAGGGATTATTATGACATGGCAGATCTCTAgtaatgctgaagtgttgtatcatcataaacagtttttTTGGCAATGTTTAGGGATTATTATGACATGGCACATCTCTAGTAATGCTGAACTGTTGTttcatcataaacagttttctggcaatgtttagggatgactGTGACATGCCACATCTCTAATAATTCTGAactgttgtatcatcataaacagtttcctggcaatgtttagggataactatgacatgacacatctctaataatgctgAACTGTTGTACCATCACAAACAGTTTCCTGGCAATGTTTAAGGATAACTATGCATGGCACATCTCTAATTatgctgaagtgttgtatcatcatgaACAGTTTTCTGCCAATGTTTAGGGATGACTGTGACATGCCACATCTCTAATAATTCtgaagtgttgtatcatcataaacagtttcctggcaatgtttagggataactatgacatggcacatctctaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU907832 lncRNA downstream 22470 35008728 ~ 35010049 (-) True G797660
TU907777 lncRNA downstream 93063 34923378 ~ 34939456 (-) False G797608
TU907772 lncRNA downstream 93684 34932480 ~ 34938835 (-) True G797608
TU907775 lncRNA downstream 94116 34920986 ~ 34938403 (-) False G797608
TU907886 lncRNA upstream 56330 35100502 ~ 35101902 (-) True G797706
TU907887 lncRNA upstream 61657 35105829 ~ 35108729 (-) True G797707
TU907923 lncRNA upstream 91369 35135541 ~ 35135846 (-) True G797742
TU907932 lncRNA upstream 99383 35143555 ~ 35143839 (-) True G797751
TU907936 lncRNA upstream 103251 35147423 ~ 35147632 (-) True G797755
XM_036987860.1 mRNA downstream 229685 34729334 ~ 34802834 (-) True LOC110531962
XM_036987861.1 mRNA downstream 236688 34729334 ~ 34795831 (-) False LOC110531962
XM_021615508.2 mRNA downstream 295235 34729334 ~ 34737284 (-) False LOC110531962
XM_021617143.2 mRNA downstream 311203 34715740 ~ 34721316 (-) True LOC110533011
XM_021615504.2 mRNA downstream 396225 34617500 ~ 34636294 (-) True eif2d
XM_021615510.2 mRNA upstream 319880 35364052 ~ 35372459 (-) True LOC110531965
XM_021615514.2 mRNA upstream 337489 35381661 ~ 35399054 (-) False LOC110531966
XM_021615511.2 mRNA upstream 337490 35381662 ~ 35399558 (-) False LOC110531966
XR_005053231.1 mRNA upstream 450892 35495064 ~ 35521884 (-) False LOC118966032
LOC110531156 mRNA upstream 512695 35556867 ~ 35562538 (-) True LOC110531156
TU907768 other downstream 156640 34869955 ~ 34875879 (-) True G797605
TU906814 other downstream 974970 34051059 ~ 34057549 (-) True G796733
TU904054 other downstream 3004251 32026071 ~ 32028268 (-) False G794311
TU903541 other downstream 3370321 31661239 ~ 31662198 (-) True G793842
TU903182 other downstream 3613546 31418455 ~ 31418973 (-) True G793489
TU908405 other upstream 310047 35354219 ~ 35354675 (-) True G798195
TU908411 other upstream 341681 35385853 ~ 35387132 (-) False LOC110531966
TU908458 other upstream 447854 35492026 ~ 35521332 (-) True LOC118966032
TU909208 other upstream 933250 35977422 ~ 35979115 (-) True LOC110531979
TU909355 other upstream 1106166 36150338 ~ 36150637 (-) True G798993

Expression Profile