RNA id: TU908024



Basic Information


Item Value
RNA id TU908024
length 308
lncRNA type inter_gene
GC content 0.64
exon number 1
gene id G797842
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35206886 ~ 35207193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccctagccttgcacgtcctgtgccatctcagcactacagtgctcctagcagtgctaaccgtggcgggcgtggtgctggtcaggcaccgtgttatgcggtggttcgcacggtgtccccagtacgcgtgcttagcccggtgcgctacatcccagcttcCCACATCTGctgggctagggtgaagatccagccagggcggttggtgccagccctgctctcaagatctccagtacgccttcacggtccggtccatccagtgccacctccacacaccagccctccgggggcagctccccgcaccaggcttcctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU907990 lncRNA upstream 21581 35184859 ~ 35185305 (+) True G797808
TU907986 lncRNA upstream 25445 35181177 ~ 35181441 (+) True G797804
TU907976 lncRNA upstream 34347 35172320 ~ 35172539 (+) True G797795
TU907970 lncRNA upstream 37815 35168864 ~ 35169071 (+) True G797789
TU907966 lncRNA upstream 38687 35167909 ~ 35168199 (+) True G797785
TU908026 lncRNA downstream 923 35208116 ~ 35208403 (+) True G797844
TU908163 lncRNA downstream 192521 35399714 ~ 35403549 (+) False LOC110531967
TU908164 lncRNA downstream 192521 35399714 ~ 35403549 (+) False LOC110531967
TU908165 lncRNA downstream 192521 35399714 ~ 35403549 (+) False LOC110531967
TU908166 lncRNA downstream 192521 35399714 ~ 35402061 (+) False LOC110531967
XM_036986939.1 mRNA upstream 102504 34946140 ~ 35104382 (+) True LOC110531155
XM_021615507.2 mRNA upstream 524102 34642919 ~ 34682784 (+) True LOC110531961
XM_036989281.1 mRNA upstream 594395 34610290 ~ 34612491 (+) True LOC110531960
XR_005053228.1 mRNA upstream 813924 34385884 ~ 34392962 (+) True LOC118966029
XM_021615501.1 mRNA upstream 857589 34344355 ~ 34349297 (+) True LOC110531955
XM_036987863.1 mRNA downstream 8678 35215871 ~ 35360678 (+) True LOC110531964
XR_002474784.2 mRNA downstream 192486 35399679 ~ 35403549 (+) False LOC110531967
XR_002474785.2 mRNA downstream 192486 35399679 ~ 35403549 (+) False LOC110531967
XR_002474786.2 mRNA downstream 192486 35399679 ~ 35403549 (+) False LOC110531967
XR_002474787.2 mRNA downstream 192486 35399679 ~ 35403549 (+) False LOC110531967
TU907166 other upstream 650264 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 1085146 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 2619498 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 2704137 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 2704531 32501847 ~ 32502355 (+) True G794892
TU908119 other downstream 157795 35364988 ~ 35372148 (+) True G797932
TU909468 other downstream 1105936 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 1827225 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 2360052 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 2863023 38070216 ~ 38071433 (+) False G800834

Expression Profile