RNA id: TU908119


Basic Information

Item Value
RNA id TU908119
length 2602
RNA type TUCP
GC content 0.47
exon number 6
gene id G797932
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35364988 ~ 35372148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacacacacacacacatataaacatatTTTCATGGCACGTGAGAGGTTGTTTTGTGGCTCCTGTTCCAGTGAGGAGCTTAGCACAGATGGTCTAAAGAAACTCAGCTCACAGTATTACCAGAAGTATTCAGACACAGGAGAGGAGCAGGCAAAAAAagagactggagagggggaaataggagtgagggagagatagagaaagagagggggggtgaagagagaataATCACTAGAGATAGAGCGGATGTGAAGAGAGGGTGAAAGAAAGAAGGTGAAAGAGAGCGGTTAGAAAGTAAAagtgggaaagagggagagagagttctgGGAGAGATGCTTGGGGCAAGAGGTCCCGTCATGTGTGTGCCATTACCACGGAGTGGATTAATAGTCCAAGGTAGCAGCACTCACGCACAGAGAGCTGTTCACACCATGCAAAGGTGTATGTTGGTTGGTTCTTCGATCCTTTtggggacatttcccacatctcatgaggacaaaggctattttaaggtTAGTGTTACAATTAGGGTTGGTTGGTGCCTGCGTGCATGAATgcgtagcctagcggttagagcgttgggccagtaaccgaaaggtggcTAGTTCGAATCCCCGAACCGACAACgggaaaaatctgtcattctgccctttAGCAAAGCAATTAATCCCCCACAACAAAAATGTTctatttattgtgtgtgtgtctttggagGACGAGTATATCAGCTACCTGTTGCCAGACTGCTCTCTCACAGAGCCTACCTTCTCCAGTTACCATGGAGATGTGAAGAGCGAGAGTGAACTTCTCATCAGTCGAGTGGATGGAGAGACAACACCCAACACACCTCCCACTGACAACGCTTCATGTGATGTTCTGTCACATTAACTGTGACGTATCAATCACAGCGCGTGTTTAAAAACCTATTGAAAGACAACCGAACTACGCCCATGTGATGACTGATTTATGATGAAAAAACCTGGACAAACAACCTGACAATAACAGGAGCTCCATCTTCGGCGTAATTCAGAGTCCACAGAGGCAGAGAGGTGATAGACCGGGGTCCCATTGTGACATAGCTGCTCTGAGAACATAATCCGCACAGCCCGAATGCACACCTCCTCACAATTCCCATCCAACGTGGCTCCGTGTACGCGTCCTCTATCCATTTCAATGTGTTGACGGTTGGAGAAATTGCTTGAGCCGCACAGATAATTCAAAAAGTATGAAAGCCAACGGTCCAATATTCTAGAACATTGCTGTGTGCACGCGTACACATTTTGGACTCTGATAGGCGCTTAAGAGTGATTGGAGGTAAACAACCCAGGGATGTACAACATCACCATGTATTGGCTCTGATCATGACTGATTACCTATTCAACTGATTCAGCTGCTAAAAGGAAGAAACAAATTATGATAAATTCGAGGCAGCTTCAGCTGGCCATTTCTCAATTAGTTTTGGCACCGCAGTGATCAAATCTCCCAAGCCTTTCTCcacaaccccctctctctttctctccatcctcatccaaCCCGCTCATAATCCAaccccctctttatctctctctcctctatgttacctctctaaccctctcaagctctgttttTGGTGCTGCTGCAGTGTGGTACATCCCCTCTCTTTCTCGATCTGTTTCACTGTACTGTGAATGGTGCTATACCTGCTCgatttctctcctcttctgttgGATGGCTCTGTTTCGTGCTGTGGCCCTGCTTATGGTGGAGGGGagctctctacccctctctctttctttgctgTGGGATCTCTCCTTCTCTTGAGACACTATGAACGACACAGGctgcttctccttctctctgctggGGCCTGCAGAAGACCTGAGAGCACTGCTGTGTTCTTTAGGAGTAGAGGCCCTGGCGGGACCGCTCCTGTCCATGTTCCTCTGGTCGTTGTACTGGTTGTTAGGGCACGGTGGTGGGCCGGACTGGTCCCTCCAGTTGAACCGTGGGCGAGGGGTGAAAGGGTGGTACCTTTGGAACCCAAAACTGAAGCGGGGCTTCCGGAATGAATGATCGTCCCTTATGAATCGTGGTCTGTAGAATCTTCCTCCAAATCTTGGTCTAAATGAACCAGTTATTCTGGGTCTAGGTGGACTTCTCATTCTTCTGAAAGGTTGTTTCTCCTCCTCAGTGTTATGTTTGATAGGTACGTCGCTGGGCCTCTTGTCACGTGACTCTTCACTGCGTTCTTTGTGTGGCATGGTGGAGCTCTGCCCTGTGAAGATTCCTGCTGCCGTTGATCCATTTATTTTGTTTAGAGGAGCCAGTTTAATTGTGTTGTCTCCAGCAGCGCACGTTTGATGTTTAAGTGTCGTCTTGTGTTGCTCTATGACATTCGTTTAATTGTCACCTCACAGCATTTCTTTCGAGACGGCTTCATTTTGGTTTCGATTTCTACGCGAGCAATGCAGAAGGTGTAGCCTAGTGGTCCCTTGTGGACATTCAACTTCTCGTTTTAAAAGGCTGTGTAGGTAAGCTTTCCAGAGACAGCACACCAATGAGTGGGTAATATTAGCTGACTAAACTCAACTACATGGTAAAGTCAATTTCTGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU908026 lncRNA upstream 156585 35208116 ~ 35208403 (+) True G797844
TU908024 lncRNA upstream 157795 35206886 ~ 35207193 (+) True G797842
TU907990 lncRNA upstream 179683 35184859 ~ 35185305 (+) True G797808
TU907986 lncRNA upstream 183547 35181177 ~ 35181441 (+) True G797804
TU907976 lncRNA upstream 192449 35172320 ~ 35172539 (+) True G797795
TU908163 lncRNA downstream 27566 35399714 ~ 35403549 (+) False LOC110531967
TU908164 lncRNA downstream 27566 35399714 ~ 35403549 (+) False LOC110531967
TU908165 lncRNA downstream 27566 35399714 ~ 35403549 (+) False LOC110531967
TU908166 lncRNA downstream 27566 35399714 ~ 35402061 (+) False LOC110531967
TU908169 lncRNA downstream 27566 35399714 ~ 35403549 (+) False LOC110531967
XM_036987863.1 mRNA upstream 4310 35215871 ~ 35360678 (+) True LOC110531964
XM_036986939.1 mRNA upstream 260606 34946140 ~ 35104382 (+) True LOC110531155
XM_021615507.2 mRNA upstream 682204 34642919 ~ 34682784 (+) True LOC110531961
XM_036989281.1 mRNA upstream 752497 34610290 ~ 34612491 (+) True LOC110531960
XR_005053228.1 mRNA upstream 972026 34385884 ~ 34392962 (+) True LOC118966029
XR_002474784.2 mRNA downstream 27531 35399679 ~ 35403549 (+) False LOC110531967
XR_002474785.2 mRNA downstream 27531 35399679 ~ 35403549 (+) False LOC110531967
XR_002474786.2 mRNA downstream 27531 35399679 ~ 35403549 (+) False LOC110531967
XR_002474787.2 mRNA downstream 27531 35399679 ~ 35403549 (+) False LOC110531967
XR_005053230.1 mRNA downstream 27531 35399679 ~ 35403549 (+) False LOC110531967
TU907166 other upstream 808366 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 1243248 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 2777600 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 2862239 32502396 ~ 32502749 (+) True G794893
TU904700 other upstream 2862633 32501847 ~ 32502355 (+) True G794892
TU909468 other downstream 940981 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 1662270 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 2195097 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 2698068 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 3415913 38788061 ~ 38788354 (+) True G801778

Expression Profile