RNA id: TU908204



Basic Information


Item Value
RNA id TU908204
length 320
lncRNA type intronic
GC content 0.40
exon number 2
gene id G798001
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35446049 ~ 35452569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tctctttttctcttccctctatcgttccagtgctttaccctgaaacagactctctatttttccaatgcacttcctattgaagttcattagagctggactattattgccctgccagaagtatttggacattttagttaaaagggaggttgcttgcaagttgGGTATTGTTATGtaaactgtattgagatgtactaatgacatgtggccgagaagactggacatttttaaggcctttgttgtgtcgatgaacaccccccccacattcataccctctgcactcatccactagacaataatacagattattgcaaatcctatgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU908164 lncRNA upstream 42500 35399714 ~ 35403549 (+) False LOC110531967
TU908209 lncRNA downstream 3900 35456469 ~ 35487180 (+) True G798006
TU908272 lncRNA downstream 92266 35544835 ~ 35549100 (+) True LOC110531971
TU908304 lncRNA downstream 142592 35595161 ~ 35595478 (+) True G798100
TU908305 lncRNA downstream 142956 35595525 ~ 35596107 (+) True G798101
TU908311 lncRNA downstream 151020 35603589 ~ 35603874 (+) True G798107
XR_002474787.2 mRNA upstream 42500 35399679 ~ 35403549 (+) False LOC110531967
XM_036987868.1 mRNA downstream 34799 35487368 ~ 35496138 (+) False LOC110531969
XM_021615517.2 mRNA downstream 34885 35487454 ~ 35496138 (+) False LOC110531969
XM_036987867.1 mRNA downstream 34899 35487468 ~ 35496138 (+) True LOC110531969
XM_021615518.2 mRNA downstream 92208 35544777 ~ 35551977 (+) False LOC110531971
XM_021615519.2 mRNA downstream 92208 35544777 ~ 35551977 (+) False LOC110531971
TU908119 other upstream 73901 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 889427 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 1324309 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 2858661 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 2943300 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 860560 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 1581849 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 2114676 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 2617647 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 3335492 38788061 ~ 38788354 (+) True G801778

Expression Profile