RNA id: TU908311


Basic Information

Item Value
RNA id TU908311
length 286
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G798107
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35603589 ~ 35603874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attcatgtgctgttctaataaccaatttatatgttcatgcaagtgactgatttaACAAATCCTCACttatcagtatctgcaatttggcagaATGCCCtgaccttgttttgagaacgaacAAAATATATCTctatttcaaggtctcagcttagagagaagcaGCCccgtgaggtattggtctgtcacatgttatgaacaaGTATTGGTCGGTCACGTGAATGAAACAAAATGGTTATGATTAATCAATTATGCTAAAtaatgcaaatataacttgtctgtgtatagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU908305 lncRNA upstream 7482 35595525 ~ 35596107 (+) True G798101
TU908304 lncRNA upstream 8111 35595161 ~ 35595478 (+) True G798100
TU908272 lncRNA upstream 54489 35544835 ~ 35549100 (+) True LOC110531971
TU908209 lncRNA upstream 116409 35456469 ~ 35487180 (+) True G798006
TU908204 lncRNA upstream 151020 35446049 ~ 35452569 (+) True G798001
TU908602 lncRNA downstream 28308 35632182 ~ 35632413 (+) True G798382
TU908603 lncRNA downstream 28659 35632533 ~ 35632745 (+) True G798383
TU908654 lncRNA downstream 62591 35666465 ~ 35684087 (+) True LOC110531972
TU908732 lncRNA downstream 175834 35779708 ~ 35802799 (+) False G798498
TU908733 lncRNA downstream 175834 35779708 ~ 35835307 (+) True G798498
XM_021615518.2 mRNA upstream 51612 35544777 ~ 35551977 (+) False LOC110531971
XM_021615519.2 mRNA upstream 51612 35544777 ~ 35551977 (+) False LOC110531971
XM_036987868.1 mRNA upstream 107451 35487368 ~ 35496138 (+) False LOC110531969
XM_036987873.1 mRNA downstream 62548 35666422 ~ 35744420 (+) False LOC110531972
XM_036987871.1 mRNA downstream 62567 35666441 ~ 35744420 (+) False LOC110531972
XM_036987870.1 mRNA downstream 79272 35683146 ~ 35744420 (+) False LOC110531972
XM_036987874.1 mRNA downstream 79278 35683152 ~ 35744420 (+) False LOC110531972
XM_036987875.1 mRNA downstream 90083 35693957 ~ 35744420 (+) False LOC110531972
TU908119 other upstream 231441 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1046967 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 1481849 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3016201 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 3100840 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 709255 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 1430544 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1963371 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 2466342 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 3184187 38788061 ~ 38788354 (+) True G801778

Expression Profile