RNA id: TU909185



Basic Information


Item Value
RNA id TU909185
length 405
lncRNA type antisense_over
GC content 0.53
exon number 3
gene id G798844
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35821519 ~ 35825732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGTGTTTGATAAATGTATCGCCAAACCACTGCCCGGCACATACACAGTGTGTCGTAATGTCTTTGTACCTGAGGTAGCTCTGTCTAGGTTTGATGTAGCTGATGCTGGGGTTCTTCTCGTAAATGTACTGGGTGAGGAGCTCAGAGCGCTGACAGGGTATGTATTCAAACTCCACACACACCGACAccgcctcagtgtgtgtgtgcagggccgCAGGCATGGTGCACTCAATGGTGTCTTCAGTtagcGTGAGGATGGTGCATTCCTGGGTACCATTGACCTTGACTCTGATCTGGGAGCCAGTGTCCAGGTGCTCCCCCTTGATGGTAACCCTGGTTCCCCCAGAACGAGAGCCCTTTCTAGGCTCCATGGATAGCAGCTTGGGGAcCAAGTATGAGAAGGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU909175 lncRNA downstream 7867 35813392 ~ 35813652 (-) True G798836
TU909061 lncRNA downstream 109146 35669911 ~ 35712373 (-) True G798744
TU908563 lncRNA downstream 217869 35603433 ~ 35603650 (-) True G798344
TU908559 lncRNA downstream 220472 35600803 ~ 35601047 (-) True G798340
TU908544 lncRNA downstream 237638 35583559 ~ 35583881 (-) True G798325
TU909229 lncRNA upstream 88465 35914197 ~ 35914434 (-) True G798883
TU909237 lncRNA upstream 105532 35931264 ~ 35932005 (-) True G798890
TU909249 lncRNA upstream 133352 35959084 ~ 35961739 (-) True G798901
TU909250 lncRNA upstream 134146 35959878 ~ 35967217 (-) True G798902
TU909254 lncRNA upstream 142355 35968087 ~ 35969282 (-) True G798906
XM_036987869.1 mRNA downstream 255248 35564261 ~ 35566271 (-) True LOC118936388
LOC110531156 mRNA downstream 258981 35556867 ~ 35562538 (-) True LOC110531156
XR_005053231.1 mRNA downstream 299635 35495064 ~ 35521884 (-) False LOC118966032
XM_021615511.2 mRNA downstream 421961 35381662 ~ 35399558 (-) False LOC110531966
XM_021615514.2 mRNA downstream 422465 35381661 ~ 35399054 (-) False LOC110531966
XM_021615523.2 mRNA upstream 30376 35856108 ~ 35859824 (-) True LOC110531974
XR_005053232.1 mRNA upstream 34913 35860645 ~ 35869013 (-) True LOC118936413
XM_036987877.1 mRNA upstream 48422 35874154 ~ 35879299 (-) False LOC118966034
XM_036987878.1 mRNA upstream 48422 35874154 ~ 35879299 (-) True LOC118966034
LOC110531976 mRNA upstream 53565 35879297 ~ 35886033 (-) True LOC110531976
TU908458 other downstream 300187 35492026 ~ 35521332 (-) True LOC118966032
TU908411 other downstream 434387 35385853 ~ 35387132 (-) False LOC110531966
TU908405 other downstream 466844 35354219 ~ 35354675 (-) True G798195
TU907768 other downstream 945640 34869955 ~ 34875879 (-) True G797605
TU906814 other downstream 1763970 34051059 ~ 34057549 (-) True G796733
TU909208 other upstream 151690 35977422 ~ 35979115 (-) True LOC110531979
TU909355 other upstream 324606 36150338 ~ 36150637 (-) True G798993
TU910500 other upstream 1002164 36827896 ~ 36907648 (-) False LOC110531982
TU910862 other upstream 1518663 37344395 ~ 37345147 (-) True G800318
TU912701 other upstream 3015477 38841209 ~ 38841512 (-) True LOC110532015

Expression Profile