RNA id: TU908805



Basic Information


Item Value
RNA id TU908805
length 204
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G798565
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35910565 ~ 35910917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAGGCAATCCTTCGCTGCATTAGCTAAGTTTTCATGTCATTGGGTGTAGTTCATAAAGGTTGCAGCGTGTATGTTGGGATGAAGTGTGAATTCATGCCAGGAATAATACGTGTGAAGTTTGATTTCCTCCCTTCTGTAATAAGCAGCCAATGAGTTCTCACGGAAGgtgataattctgactaaaaccacAGAATAAAGCCGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU908804 lncRNA upstream 593 35909764 ~ 35909972 (+) True G798564
TU908733 lncRNA upstream 75258 35779708 ~ 35835307 (+) True G798498
TU908732 lncRNA upstream 107766 35779708 ~ 35802799 (+) False G798498
TU908654 lncRNA upstream 226478 35666465 ~ 35684087 (+) True LOC110531972
TU908603 lncRNA upstream 277820 35632533 ~ 35632745 (+) True G798383
TU908808 lncRNA downstream 3771 35914688 ~ 35914927 (+) True G798568
TU908811 lncRNA downstream 4820 35915737 ~ 35919753 (+) False G798569
TU908810 lncRNA downstream 4965 35915882 ~ 35919753 (+) True G798569
TU908825 lncRNA downstream 24757 35935674 ~ 35936217 (+) True G798583
TU908826 lncRNA downstream 25752 35936669 ~ 35937011 (+) True G798584
XM_021615528.2 mRNA upstream 17155 35885933 ~ 35893410 (+) False LOC110531975
XM_021615464.2 mRNA downstream 338427 36249344 ~ 36262924 (+) False LOC110531941
XM_021615463.2 mRNA downstream 338430 36249347 ~ 36262924 (+) False LOC110531941
XM_021615465.2 mRNA downstream 338434 36249351 ~ 36262924 (+) False LOC110531941
XM_021615466.2 mRNA downstream 338438 36249355 ~ 36262924 (+) True LOC110531941
XM_021615449.2 mRNA downstream 476001 36386918 ~ 36396094 (+) True si:dkey-7l6.3
TU908119 other upstream 538417 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1353943 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 1788825 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3323177 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 3407816 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 402212 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 1123501 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1656328 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 2159299 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2877144 38788061 ~ 38788354 (+) True G801778

Expression Profile