RNA id: TU908810


Basic Information

Item Value
RNA id TU908810
length 3850
lncRNA type read_through
GC content 0.45
exon number 2
gene id G798569
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35915737 ~ 35919753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTCATCAGAGTGATGAAGTGTACCCTCACCTGTGGTGAGGGTACACATCAAGGACATTCAGTTTCATACAATAATAGTTTAGTTTATTTGAATGGGGACAAACACATTGACACAATGAACAAACAATCGTCCGATGCATTGCACTAGTGTGTCTAGCTCAAGCTCATTTTCCACACCCGTCCCAAAATAGACTTTAATGAAAAGAAATATGTAATCAATAAAAATATCACATCTGTACATTATCATAATTATATCCACAATGCCAGCCTTCAATTAGATGCACCTAAGCAAATCTCATAGCAGTAATATTTACAACTTGGACATACAAGTCTTAATGGGTCTGTTGGATAACACACGGCAGTTCATACATGATTGCACTGCTGAAGCAGTAGCAGCCTGTTGGGAAACAATGCAGTAGAAAGACCCCGCAGTTTTCCCTGGTGGACATTCCAGGCCTTTGCAGCTCCAGCATCTGTTAGGGCAGGGGGTTCAGGGGAAAGACCATTGAGACACTTGAAGACAAGCTTCACATTTGAAAAATCAGATGAAGTGTTCAAAGCTCAGTACATTGTACAGGATGTGTCCAGGATTTTCAGCGCACGGCTCTAGTGAcaattctttaacttagatttttggttgaggtggagacgtgaatccaacaagttattaatttgtagacaaactggatatTGAAATGCATTtggcaaccaaatatcaacatttgaagaatGTGTACCTTGGACAGTTCCatttacttttgtaatacagtatatAGCAATAAGGCTAATGTAACAGTACTTATTCTACCTTAAAATAAGTAACAGATCCATGGCCACATTCTGAGGTTAGCCTACTGGAACTATAAATGTCTTGTGTAATTATAGAaagtgtgcatgttcaagatagcatgcaaaggtcatcacaggtctgtggagatcttcacaattgctataaTAATCTGTGTAAAATCTCAAAcaacattgatcattgacactatGTACTTTTAATATAATCTGAACTGCAATCCAGGTAATTTGGTTATggtattagatgaagcacagtgaaaTATTATTGATCAACGTCTTACCCAAATATTACCCATATTTCCACGTTGAAATTATGTGGTGTGCCCAGTGAGTTAGTGATCATCAAGCTCAGGTAGTATTTACATCACACATTGTCCATGATGGTTCTATCACCTTTATACTTCCTGGGTGGACTTTTTGTGTTCTTCACTTGTGATCTGGGGACTTTGGTCCTGTTCATCATCATTTTCTTTCTTTGACTTCTGTTCCAGACTTAACTGTGTGAGTCTCCCTAGGTTTCTTACTTGCCTGTagagaacagaggaacagagcaCAGAGGGAATAAGATAATTAAAGGATGGATTCCCTCCTTTTGCCCTCCCAAGTGAGTTGCACCGCCTTCTGTTCATCTTACTATCTTAGGTCTTGTTGTTCTTGTTTTACtctgcttttgtcacttccattTTTTTCTCTTCACATTCTTTTGCTACTTtatttcttcttctttctctgcTCATTAGAATGTATAGTTGGGTCTGGCACACTGTTTTCTCCAGGCTCATCCCCCTTATTGTTCGGTGTAGAAGTGGCCTGAATTTCTCCAGATTCTGCGGGTGTTTCTGATAGCTCTGTTCCACTTTCAGGCAGGCGTTGTCATCCAGCACAGACtagctatactgtacatctcctCTATGTAATTCAAGTTCTCTTCAGTGGCTGGAATGCATTTTGGGCTcagtgcaggcttttgttccggCTCGTCTTGACGCTGTCCATTGCACTAATAATATTTTGACCCAGTGTGGACCCATCTTTGCAGAGCGCGGTCTGGGTTCGGTCTGGGTCTGCTTCAATGTAAACAAAGCGCTCTCCATTGGAACAGTTAGTGAGTTGGTTCTTGCATCGAATCATGCGTTTCATAACTTTCCCCAGTCTTGCAGCCTGCTTTGGTCAGAAACTCTGTCATCTGCTGATTCAGGCAGCTCTTTGATTGTACCTTGAACTGAGTTCTGATTGGCCATGCGTGACTTCAGACTGACAGGGTTGTTTTCCTTGAACAGTACATGCTTTCCACAGACATATATTCCTCCAATAAGGAGTTGCCCTTGCCTCCTATTTACTTAGATACGCCAGAGTGCACTCTCTGTACCAACCTCAAGTGGCTTGGGTGGATTCCCTGTATGCTATGGTTGAGCTATACTTCCTTCAGGGGGTTAGCTCTGGCCTCCTCCCTTGTAAGGATTTTTCTCTCCAAGATGAAGATAGGGTGAACCGTTTCCTTTGGTGTGTTGCGCCCGGCAACTGTACTTCAAGCCTCCTTTTCTTTAACATTTCCCTTAATGCTGCTTGATGTGGCAGCCCCCATGCACTCTGCCATGTCAACTTGTTCTGATTTCACTATATTATGTCAAAAATCACATATAATCAAAACAAAATAATTAGGCAAGATTGTTCAGAGTAATGTAGTGAATTTAAATCTTGTTGTATTAACAGAGGGTGGTTGATTTTGTAGGAGATATTCCCCAGATTAAGGTGTCTCCTTTGTTCAGGCAAACCCACAACGGTAAGGCTGATGTGTGCGGCTTCATGGTCAGGTTCAAACAGTGCACTCAGTACACAAAGAACAAACTGTGGCCCTATGTGGGATGTACCCAGACGACCATATTTACTTAGCTTAGCGAATCAAGTGGTAaggtatcttagtggtgaagtGTTACCCCCTATTGACTTGATAGGCATAAATGTTCGTTGTCTCTGTTTGGGTCACTACACCACCCATGTCTCATGTTACAGtcatgacaacaaaaaaaaacctggccTGTATAAAAGGTCAAACCTGAGATGCCCTGCCTCATCACCACGGTGGCCCGCTGAGTGACTCCTCCTGCAAAGTGCTTGGCTCTGTCCTCTCTTAATTGGTTGACAGTGGCGACACATGCCTGCTTAGTGTCCTCTCTGACCTCACTTTCTGCGACAATTTCAGTTTTGGACCCTCTTCTTCCTGTGGGTGCGTCCGTGGCAACTCACCTTGTGAGTTAGTTGTCGTGCCAACCAAAGCGACAATGTTTTGGAGAGGAGTCTGAGCCAGCAGTGCCAGCTGCCAATCACATTGTTCCTTCCTCTAGCCATCCCGCCCAGCTCTCGTATCAGTCCCCCAAAATCCCGAGGCAGGCAGTAGCGCGGGACACCTCTGAGGTCTTTGGGGATGTCTCGGCTGTGACAGAGGTCCTGGAAGTAGACAAGGGCAAAGCCGTGGCTCTTGCCTGTCCCCTGTAGTGCCCCCtgcagacaggacagggcagcCCTGAACACCGGCCCCGTCACTGAGGAgggctccctctcctcctctccgctcctACCTTCCTCTTTCCATTCCACTCCTTTCTCCATTCCTGCTTGCTCCTGTATATCTCTTGTTAACTCAAGTCCTTtcagctcctctcctccactctccccttGTCgcatctcctctcctttactccctCCTATCTTTTTCTCATCTCTCCTATTCCCTCCATCTCGCTCTTCTCTCCAGCTCTTGTAGGACTCCTTAGCCTCTGGGCTCCATATGATCAGCACCCGGCCTCCTGCCTCTCTGACTGCCTCCCACTGTCCATACATCCAGGGCACAGGGCCCAGCTCAGCCACACCAGCCCCAGACCTCTCCATAGCCCCAGGACCATCCCCATTGGAGATCTGGGCCCACAGAGCCATGCGCACGTCAGCACACAGCTCTCCCTGTAGAATGGAGGCCAAAGCACACACGGGAGACACATGGGTTGACAGCTCTGAGGAACACACCAACAACACAGGCCTCTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU908808 lncRNA upstream 955 35914688 ~ 35914927 (+) True G798568
TU908805 lncRNA upstream 4965 35910565 ~ 35910917 (+) True G798565
TU908804 lncRNA upstream 5910 35909764 ~ 35909972 (+) True G798564
TU908733 lncRNA upstream 80575 35779708 ~ 35835307 (+) True G798498
TU908732 lncRNA upstream 113083 35779708 ~ 35802799 (+) False G798498
TU908825 lncRNA downstream 15921 35935674 ~ 35936217 (+) True G798583
TU908826 lncRNA downstream 16916 35936669 ~ 35937011 (+) True G798584
TU909015 lncRNA downstream 198415 36118168 ~ 36118819 (+) True G798701
TU909031 lncRNA downstream 229207 36148960 ~ 36149217 (+) True G798717
TU909032 lncRNA downstream 229583 36149336 ~ 36149750 (+) True G798718
XM_021615528.2 mRNA upstream 22472 35885933 ~ 35893410 (+) False LOC110531975
XM_021615464.2 mRNA downstream 329591 36249344 ~ 36262924 (+) False LOC110531941
XM_021615463.2 mRNA downstream 329594 36249347 ~ 36262924 (+) False LOC110531941
XM_021615465.2 mRNA downstream 329598 36249351 ~ 36262924 (+) False LOC110531941
XM_021615466.2 mRNA downstream 329602 36249355 ~ 36262924 (+) True LOC110531941
XM_021615449.2 mRNA downstream 467165 36386918 ~ 36396094 (+) True si:dkey-7l6.3
TU908119 other upstream 543734 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1359260 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 1794142 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3328494 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 3413133 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 393376 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 1114665 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1647492 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 2150463 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2868308 38788061 ~ 38788354 (+) True G801778

Expression Profile