RNA id: TU908825



Basic Information


Item Value
RNA id TU908825
length 544
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G798583
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35935674 ~ 35936217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacgtcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttaattacacacaggtggattgtatttatcatcattagtcatttaggtcaatattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttcctgttatgcacgtgagtgaggacccaaaagcggtttaacaaaaacagagtcctttaatgtcaaaacacagggaagacatagatcctcttcggATGTATATAATGGCAAAAaagacaacccgcagagagggcgacaaacgaatcataaagtccttctgatatTTACAGAAGAGTCccccttcttagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU908811 lncRNA upstream 15921 35915737 ~ 35919753 (+) False G798569
TU908810 lncRNA upstream 15921 35915882 ~ 35919753 (+) True G798569
TU908808 lncRNA upstream 20747 35914688 ~ 35914927 (+) True G798568
TU908805 lncRNA upstream 24757 35910565 ~ 35910917 (+) True G798565
TU908804 lncRNA upstream 25702 35909764 ~ 35909972 (+) True G798564
TU908826 lncRNA downstream 452 35936669 ~ 35937011 (+) True G798584
TU909015 lncRNA downstream 181951 36118168 ~ 36118819 (+) True G798701
TU909031 lncRNA downstream 212743 36148960 ~ 36149217 (+) True G798717
TU909032 lncRNA downstream 213119 36149336 ~ 36149750 (+) True G798718
TU909033 lncRNA downstream 213745 36149962 ~ 36150371 (+) True G798719
XM_021615528.2 mRNA upstream 42264 35885933 ~ 35893410 (+) False LOC110531975
XM_021615464.2 mRNA downstream 313127 36249344 ~ 36262924 (+) False LOC110531941
XM_021615463.2 mRNA downstream 313130 36249347 ~ 36262924 (+) False LOC110531941
XM_021615465.2 mRNA downstream 313134 36249351 ~ 36262924 (+) False LOC110531941
XM_021615466.2 mRNA downstream 313138 36249355 ~ 36262924 (+) True LOC110531941
XM_021615449.2 mRNA downstream 450701 36386918 ~ 36396094 (+) True si:dkey-7l6.3
TU908119 other upstream 563526 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1379052 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 1813934 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3348286 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 3432925 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 376912 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 1098201 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1631028 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 2133999 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2851844 38788061 ~ 38788354 (+) True G801778

Expression Profile