RNA id: TU908826



Basic Information


Item Value
RNA id TU908826
length 343
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G798584
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35936669 ~ 35937011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctcaccgagcgcctcctggcgcactcgaggaggaaacctggtggcaacggaggaaatcatcgatcagcgaacggtccagcacgtcccgagagggaacccaactcctttcctcaggaccgtacccctcccaatccactaggtactgatgaccacggccccgaggacgcatgtccaaaatcttacggaccctgtagataggtgcgccctcgacaaggatggggggggggaagacgagcgggggcgcgaagaacgggcttaacacaggagacatggaagaccgggtggacgcgacgaagatatcgcggaagaagaagtcgcactgcgacaggattaatgatctgag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU908825 lncRNA upstream 452 35935674 ~ 35936217 (+) True G798583
TU908811 lncRNA upstream 16916 35915737 ~ 35919753 (+) False G798569
TU908810 lncRNA upstream 16916 35915882 ~ 35919753 (+) True G798569
TU908808 lncRNA upstream 21742 35914688 ~ 35914927 (+) True G798568
TU908805 lncRNA upstream 25752 35910565 ~ 35910917 (+) True G798565
TU909015 lncRNA downstream 181157 36118168 ~ 36118819 (+) True G798701
TU909031 lncRNA downstream 211949 36148960 ~ 36149217 (+) True G798717
TU909032 lncRNA downstream 212325 36149336 ~ 36149750 (+) True G798718
TU909033 lncRNA downstream 212951 36149962 ~ 36150371 (+) True G798719
TU908950 lncRNA downstream 215515 36152526 ~ 36189791 (+) False G798672
XM_021615528.2 mRNA upstream 43259 35885933 ~ 35893410 (+) False LOC110531975
XM_021615464.2 mRNA downstream 312333 36249344 ~ 36262924 (+) False LOC110531941
XM_021615463.2 mRNA downstream 312336 36249347 ~ 36262924 (+) False LOC110531941
XM_021615465.2 mRNA downstream 312340 36249351 ~ 36262924 (+) False LOC110531941
XM_021615466.2 mRNA downstream 312344 36249355 ~ 36262924 (+) True LOC110531941
XM_021615449.2 mRNA downstream 449907 36386918 ~ 36396094 (+) True si:dkey-7l6.3
TU908119 other upstream 564521 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1380047 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 1814929 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3349281 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 3433920 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 376118 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 1097407 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1630234 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 2133205 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2851050 38788061 ~ 38788354 (+) True G801778

Expression Profile