RNA id: TU909250



Basic Information


Item Value
RNA id TU909250
length 224
lncRNA type intronic
GC content 0.50
exon number 2
gene id G798902
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 35959878 ~ 35967217 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTatcacacgacactcatcctactacaggtcagtcgcaGTACCACAccacactcatcctactacaggtcagtcacagtaccacaccacactcatcctactacaggtcagtcgcaGTACCACAccacactcatcctactacaggtcagtcgcagtatcacacgacactcatcctactacaggtcagtcacagtaccacacgacactcatcctactacaggtcagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU909237 lncRNA downstream 27873 35931264 ~ 35932005 (-) True G798890
TU909229 lncRNA downstream 45444 35914197 ~ 35914434 (-) True G798883
TU909185 lncRNA downstream 134146 35821519 ~ 35825732 (-) True G798844
TU909175 lncRNA downstream 146226 35813392 ~ 35813652 (-) True G798836
TU909061 lncRNA downstream 247505 35669911 ~ 35712373 (-) True G798744
TU909254 lncRNA upstream 870 35968087 ~ 35969282 (-) True G798906
TU909338 lncRNA upstream 151706 36118923 ~ 36145645 (-) True G798976
TU909354 lncRNA upstream 181592 36148809 ~ 36149285 (-) True G798992
TU909380 lncRNA upstream 185231 36152448 ~ 36163560 (-) False G798996
TU909382 lncRNA upstream 185231 36152448 ~ 36188688 (-) False G798996
XM_021615531.2 mRNA downstream 32165 35918737 ~ 35927713 (-) True LOC110531978
XR_005053234.1 mRNA downstream 41152 35915945 ~ 35918726 (-) True LOC118966037
XR_005053233.1 mRNA downstream 46040 35911525 ~ 35913838 (-) True LOC118966036
XM_021615530.2 mRNA downstream 55494 35896429 ~ 35904384 (-) False LOC110531977
XM_036987887.1 mRNA upstream 13581 35980798 ~ 36110044 (-) False LOC110531157
XM_036987888.1 mRNA upstream 13581 35980798 ~ 36110044 (-) False LOC110531157
XM_036987889.1 mRNA upstream 13581 35980798 ~ 36110044 (-) False LOC110531157
XM_036987891.1 mRNA upstream 13581 35980798 ~ 36110044 (-) False LOC110531157
XM_036987892.1 mRNA upstream 13581 35980798 ~ 36110044 (-) False LOC110531157
TU908458 other downstream 438546 35492026 ~ 35521332 (-) True LOC118966032
TU908411 other downstream 572746 35385853 ~ 35387132 (-) False LOC110531966
TU908405 other downstream 605203 35354219 ~ 35354675 (-) True G798195
TU907768 other downstream 1083999 34869955 ~ 34875879 (-) True G797605
TU906814 other downstream 1902329 34051059 ~ 34057549 (-) True G796733
TU909208 other upstream 10205 35977422 ~ 35979115 (-) True LOC110531979
TU909355 other upstream 183121 36150338 ~ 36150637 (-) True G798993
TU910500 other upstream 860679 36827896 ~ 36907648 (-) False LOC110531982
TU910862 other upstream 1377178 37344395 ~ 37345147 (-) True G800318
TU912701 other upstream 2873992 38841209 ~ 38841512 (-) True LOC110532015

Expression Profile