RNA id: TU908957


Basic Information

Item Value
RNA id TU908957
length 2531
lncRNA type inter_gene
GC content 0.34
exon number 7
gene id G798672
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36152526 ~ 36235544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAACTGACAGAGTGTTCAAACCTATTCCCCTAATTAGAACACTATTCCCCAAATCAGTCTTAGCAGAAAAGGGTAACACAGATTCCAACACAAATGATTCAGAGGCACCTGTGTCTCTCAGGATCTTCACTGGCACTAGGTCTTTACTTCCtaacataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcagttgaaatacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaaagttttaaacataactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaatagccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactatggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacaccatggacaattttcagcaagttgcagcaattgaactacagaaataactactttccataaacaagctctaaaatcatgtttgatgaactctggatacaatgtttaaaacataactggatacaatgtttaaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtaaattttttacagaactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccaattttccataaacaaagtctaaaatcatgtttgatgcaatctggatacaatgttttaaacataacagttcaaactagatgatagagacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactatggccaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactgtggacaattttcagcaaagtgcatcaaacatgattttagaccttgtttatggaaaagtggttatatctgtagtttaattgctgcaacttgctgaaaattgtccatagtatccctttcatctagtttgaacagttctgtaaaaaatgtacttccaaagtgcaaccaaacatgatttagaccttgtttatgtaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccagtgtccctatcatctagtttgaacagttatgtttaaaacattgtatccagagtgcatcaaacatgatttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccttaacatctagtttgaacagttatgtttaaaacattgtatccagagtgcatcaaacatgattttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcatcttgctgaaaattgtccctatcatctagtttgaacagttatgtttaaaacattgtatccagagttcatcaaacatgattttagaccttgtttatggaaaagtggttatttctgtagttcaattgctgcaacttgctgaaaattgtccacagtgtccctatcatctagtttgaacagttatgtttaaaacattgtatccagagtgcatcaaacatgattttagaccttgtttatggaaaagtggttattcctgtagttcaattgctgagacttgctgaaaaatgtccctatcatctagtttgaacagttatgtttaaatcaaatcaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909033 lncRNA upstream 2155 36149962 ~ 36150371 (+) True G798719
TU909032 lncRNA upstream 2776 36149336 ~ 36149750 (+) True G798718
TU909031 lncRNA upstream 3309 36148960 ~ 36149217 (+) True G798717
TU909015 lncRNA upstream 33707 36118168 ~ 36118819 (+) True G798701
TU908826 lncRNA upstream 215515 35936669 ~ 35937011 (+) True G798584
TU909420 lncRNA downstream 1405 36236949 ~ 36237149 (+) True G799011
TU909436 lncRNA downstream 67528 36303072 ~ 36303901 (+) True G799026
TU909506 lncRNA downstream 146492 36382036 ~ 36382235 (+) True G799089
TU909508 lncRNA downstream 147592 36383136 ~ 36383353 (+) True G799091
TU909519 lncRNA downstream 162657 36398201 ~ 36399373 (+) True G799096
XM_021615528.2 mRNA upstream 259116 35885933 ~ 35893410 (+) False LOC110531975
XM_021615464.2 mRNA downstream 13800 36249344 ~ 36262924 (+) False LOC110531941
XM_021615463.2 mRNA downstream 13803 36249347 ~ 36262924 (+) False LOC110531941
XM_021615465.2 mRNA downstream 13807 36249351 ~ 36262924 (+) False LOC110531941
XM_021615466.2 mRNA downstream 13811 36249355 ~ 36262924 (+) True LOC110531941
XM_021615449.2 mRNA downstream 151374 36386918 ~ 36396094 (+) True si:dkey-7l6.3
TU908119 other upstream 780378 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1595904 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2030786 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3565138 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 3649777 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 77585 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 798874 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1331701 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1834672 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2552517 38788061 ~ 38788354 (+) True G801778

Expression Profile