RNA id: TU908985


Basic Information

Item Value
RNA id TU908985
length 1153
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G798675
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36168770 ~ 36195022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactatggccaattttcagcaagttgcagcaattgaactacagaaataaccacttttcaataAACAAAGtcttaaatcatgtttgatgcaatctgGATACAATGTCTTAAACATAacagttcaaactagatgatagagacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttctccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggaaactatggccaattttcagcaagttgcagcaattgaactacagaaataactactttccataaacaagctctaaaatcatgtttgatgaactctggatacaatctttAAAACATaactggatacaatgtttaaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttacataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttaaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctacaatcatgtttgatgcactctggatacaaagttttaaacataactgttcaaactagatgattgggacactgtggacaattttcagcaatttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcaatctggatacaatgttttaaacataacagttcaaactagatgatagagacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU908986 lncRNA upstream 3812 36168770 ~ 36173855 (+) False G798675
TU908967 lncRNA upstream 4469 36172441 ~ 36173198 (+) False G798673
TU909033 lncRNA upstream 27296 36149962 ~ 36150371 (+) True G798719
TU909032 lncRNA upstream 27917 36149336 ~ 36149750 (+) True G798718
TU909031 lncRNA upstream 28450 36148960 ~ 36149217 (+) True G798717
TU908974 lncRNA downstream 658 36195680 ~ 36204144 (+) False G798674
TU908975 lncRNA downstream 658 36195680 ~ 36199035 (+) False G798674
TU908976 lncRNA downstream 658 36195680 ~ 36228598 (+) True G798674
TU908971 lncRNA downstream 16958 36211980 ~ 36219817 (+) True G798673
TU909050 lncRNA downstream 34085 36229107 ~ 36231013 (+) True G798734
XM_021615528.2 mRNA upstream 284257 35885933 ~ 35893410 (+) False LOC110531975
XM_021615464.2 mRNA downstream 54322 36249344 ~ 36262924 (+) False LOC110531941
XM_021615463.2 mRNA downstream 54325 36249347 ~ 36262924 (+) False LOC110531941
XM_021615465.2 mRNA downstream 54329 36249351 ~ 36262924 (+) False LOC110531941
XM_021615466.2 mRNA downstream 54333 36249355 ~ 36262924 (+) True LOC110531941
XM_021615449.2 mRNA downstream 191896 36386918 ~ 36396094 (+) True si:dkey-7l6.3
TU908119 other upstream 805519 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1621045 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2055927 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3590279 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 3674918 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 118107 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 839396 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1372223 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1875194 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2593039 38788061 ~ 38788354 (+) True G801778

Expression Profile