RNA id: TU908971



Basic Information


Item Value
RNA id TU908971
length 546
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G798673
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36172441 ~ 36219817 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttttccataaacaaagtctaaaatcatgtttgatgcactctggatacaaagttttaaacataactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttcaataaacaagctctaacatcatgtttgatgaactctggatacaatgttttaaacataactgttcaaactagatgatagggacaattttcagcaagtagcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtaaattttttacagaactgttcaaactagatgatagggacactggacaatattcaacaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaattacattttttacagaactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU908989 lncRNA upstream 255 36187208 ~ 36211725 (+) True G798676
TU908974 lncRNA upstream 7836 36195680 ~ 36204144 (+) False G798674
TU908952 lncRNA upstream 10266 36188746 ~ 36201714 (+) False G798672
TU908992 lncRNA upstream 11108 36194751 ~ 36200872 (+) True G798678
TU908970 lncRNA upstream 12561 36172806 ~ 36199419 (+) False G798673
TU909050 lncRNA downstream 9290 36229107 ~ 36231013 (+) True G798734
TU908942 lncRNA downstream 14285 36234102 ~ 36235544 (+) False G798672
TU908944 lncRNA downstream 14285 36234102 ~ 36235544 (+) False G798672
TU908948 lncRNA downstream 14285 36234102 ~ 36235544 (+) False G798672
TU908949 lncRNA downstream 14285 36234102 ~ 36235544 (+) False G798672
XM_021615528.2 mRNA upstream 318570 35885933 ~ 35893410 (+) False LOC110531975
XM_021615464.2 mRNA downstream 29527 36249344 ~ 36262924 (+) False LOC110531941
XM_021615463.2 mRNA downstream 29530 36249347 ~ 36262924 (+) False LOC110531941
XM_021615465.2 mRNA downstream 29534 36249351 ~ 36262924 (+) False LOC110531941
XM_021615466.2 mRNA downstream 29538 36249355 ~ 36262924 (+) True LOC110531941
XM_021615449.2 mRNA downstream 167101 36386918 ~ 36396094 (+) True si:dkey-7l6.3
TU908119 other upstream 839832 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1655358 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2090240 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3624592 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 3709231 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 93312 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 814601 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1347428 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1850399 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2568244 38788061 ~ 38788354 (+) True G801778

Expression Profile