RNA id: TU909371


Basic Information

Item Value
RNA id TU909371
length 1031
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G798995
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36233938 ~ 36235633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgtacatattctttatccccttacactgtgtacaagacagtagttttggaattgttagttagattacttgttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttgatttgatttaaacataactgttcaaactagatgatagggacatttttcagcaagtctcagcaattgaactacaggaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacactggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttacataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgatagggacactgtggacaattttcagcaagttgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactttggaagtacattttttacagaactgttcaaactagatgaaagggatactatggacaattttcagcaagttgcagcaattaaactacagatataaccacctttccataaacaaggtctaacatcatgtttgatgcactctggatacaatgttttaaacataactgttcaaactagatgatagggacaattttcagcaagttgcagcaattgatctacagaaataaccacttttccataaacaaggtctaaaatcatgtttgatgcactctggatacaagccgcgccctcagagcatgcgcagaccagctggccggtgtgtttacggacatattcaatcaatccctataccagtctgctgttcccacatgctttaagggggccaccattgttcctgttcccaagaaagctaaggtaactgagctaaacgactaccgccccgtagcactcacatccgtcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909388 lncRNA downstream 5445 36213368 ~ 36228493 (-) True G798996
TU909405 lncRNA downstream 21142 36172834 ~ 36212796 (-) True G798997
TU909400 lncRNA downstream 34484 36172834 ~ 36199454 (-) False G798997
TU909428 lncRNA upstream 8214 36243847 ~ 36244054 (-) True G799019
TU909545 lncRNA upstream 24328 36259961 ~ 36262909 (-) True G799117
TU909598 lncRNA upstream 143742 36379375 ~ 36379691 (-) True G799170
TU909625 lncRNA upstream 180717 36416350 ~ 36416599 (-) True G799192
TU909626 lncRNA upstream 184193 36419826 ~ 36420085 (-) True G799193
XM_036987894.1 mRNA downstream 123894 35980798 ~ 36110044 (-) False LOC110531157
XM_021615462.2 mRNA upstream 58805 36294438 ~ 36318533 (-) False snap29
XM_021615460.2 mRNA upstream 58805 36294438 ~ 36318554 (-) False snap29
XM_021615459.2 mRNA upstream 58805 36294438 ~ 36318652 (-) True snap29
XM_021615452.2 mRNA upstream 99751 36335384 ~ 36369350 (-) False LOC110531936
XM_021615453.2 mRNA upstream 99751 36335384 ~ 36369350 (-) False LOC110531936
TU909355 other downstream 83301 36150338 ~ 36150637 (-) True G798993
TU909208 other downstream 254823 35977422 ~ 35979115 (-) True LOC110531979
TU908458 other downstream 712606 35492026 ~ 35521332 (-) True LOC118966032
TU908411 other downstream 846806 35385853 ~ 35387132 (-) False LOC110531966
TU908405 other downstream 879263 35354219 ~ 35354675 (-) True G798195
TU910500 other upstream 592263 36827896 ~ 36907648 (-) False LOC110531982
TU910862 other upstream 1108762 37344395 ~ 37345147 (-) True G800318
TU912701 other upstream 2605576 38841209 ~ 38841512 (-) True LOC110532015
TU912768 other upstream 2730823 38966456 ~ 38996032 (-) True G802100
TU912807 other upstream 2814897 39050530 ~ 39061381 (-) True G802138

Expression Profile