RNA id: TU909436



Basic Information


Item Value
RNA id TU909436
length 517
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G799026
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36303072 ~ 36303901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCCAGAGTAAAGAGATAGAGGTAGGAATAAGCAGGGAGGGACTGGGCATTACTTGCTGCTGGCTTGGTAGACAACAGGCTCTTCTGGCAGGGACTTGGTGGTCTCAGGCTTGGCCTTAAAGTAAGTGACAAGGCCTCCCCACACACTCTTAATGCTGTTGATGTGTTTCTGGCTGGTTTTCAGGTCTTGGCCCATGTTGTCCACCATCCTCTCGGTCCTCTTCAGAGCCTCCCCCTGACGCATCAGCTCCTCTGCAGTCTCAGCGCCGATCTTCTCCGACTCATAAATGAGCCCCAGGGAGCGGTGGCTGCTGACCACCGCAGACTTGGCCGTACGCATCACTTCCTGTTGGAGGCATCTCTGCTTGCGCTCTGCCtcactcatccccctctcttggGGGTCGTCAAATCCCCCACTTGACCAGCGCtgctcctcctcatcatcatctgcaAATGGGTTGTGGGTTCTGGGGTACGCCATCTTTTCAACAGAACAGCAGAGTTATGACAGTGGAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU909420 lncRNA upstream 65923 36236949 ~ 36237149 (+) True G799011
TU908954 lncRNA upstream 67528 36234102 ~ 36235544 (+) False G798672
TU909506 lncRNA downstream 78135 36382036 ~ 36382235 (+) True G799089
TU909508 lncRNA downstream 79235 36383136 ~ 36383353 (+) True G799091
TU909519 lncRNA downstream 94300 36398201 ~ 36399373 (+) True G799096
TU909511 lncRNA downstream 95923 36399824 ~ 36402989 (+) False G799094
TU909512 lncRNA downstream 98143 36402044 ~ 36402739 (+) False G799094
XM_021615464.2 mRNA upstream 40148 36249344 ~ 36262924 (+) False LOC110531941
XM_021615463.2 mRNA upstream 40148 36249347 ~ 36262924 (+) False LOC110531941
XM_021615465.2 mRNA upstream 40148 36249351 ~ 36262924 (+) False LOC110531941
XM_021615466.2 mRNA upstream 40148 36249355 ~ 36262924 (+) True LOC110531941
XM_021615528.2 mRNA upstream 409662 35885933 ~ 35893410 (+) False LOC110531975
XM_021615449.2 mRNA downstream 83017 36386918 ~ 36396094 (+) True si:dkey-7l6.3
trnap-agg-57 mRNA downstream 169006 36472907 ~ 36472978 (+) True trnap-agg-57
trnap-agg-58 mRNA downstream 170235 36474136 ~ 36474207 (+) True trnap-agg-58
trnap-agg-59 mRNA downstream 172869 36476770 ~ 36476841 (+) True trnap-agg-59
trnap-agg-60 mRNA downstream 174100 36478001 ~ 36478072 (+) True trnap-agg-60
TU908119 other upstream 930924 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1746450 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2181332 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3715684 32583606 ~ 32587388 (+) True G794886
TU904701 other upstream 3800323 32502396 ~ 32502749 (+) True G794893
TU909468 other downstream 9228 36313129 ~ 36316805 (+) True G799053
TU910049 other downstream 730517 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1263344 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1766315 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2484160 38788061 ~ 38788354 (+) True G801778

Expression Profile