RNA id: TU909659



Basic Information


Item Value
RNA id TU909659
length 202
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G799219
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36538298 ~ 36538499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggttcaaatcccggatgagcccttttgcagatccttgaacaatctcagacaggcagatcttgtcggaatgccgactatcacctcttgggcgcaggacaaggtggctgaatggttttggcgataggactgcaaatctattttgataagcacttgttggttcaacgtcgcacaacatttattattttagataacctgcagaatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU909658 lncRNA upstream 1816 36536238 ~ 36536482 (+) True G799218
TU909656 lncRNA upstream 14634 36523384 ~ 36523664 (+) True G799216
TU909654 lncRNA upstream 43246 36476096 ~ 36495052 (+) True G799214
TU909637 lncRNA upstream 78880 36447598 ~ 36459418 (+) True G799200
TU909635 lncRNA upstream 85264 36447598 ~ 36453034 (+) False G799200
TU909661 lncRNA downstream 24893 36563392 ~ 36585315 (+) True G799221
TU909664 lncRNA downstream 72368 36610867 ~ 36622475 (+) True trnap-agg-149
TU909681 lncRNA downstream 92792 36631291 ~ 36631528 (+) True G799239
TU909687 lncRNA downstream 101331 36639830 ~ 36640639 (+) True G799245
TU909691 lncRNA downstream 106811 36645310 ~ 36645631 (+) True G799249
trnap-agg-98 mRNA upstream 1382 36536845 ~ 36536916 (+) True trnap-agg-98
trnap-agg-97 mRNA upstream 2785 36535442 ~ 36535513 (+) True trnap-agg-97
trnap-agg-96 mRNA upstream 4017 36534210 ~ 36534281 (+) True trnap-agg-96
trnap-agg-95 mRNA upstream 5242 36532985 ~ 36533056 (+) True trnap-agg-95
trnap-agg-94 mRNA upstream 8929 36529298 ~ 36529369 (+) True trnap-agg-94
trnap-agg-99 mRNA downstream 980 36539479 ~ 36539550 (+) True trnap-agg-99
trnap-agg-100 mRNA downstream 2383 36540882 ~ 36540953 (+) True trnap-agg-100
trnap-agg-101 mRNA downstream 3786 36542285 ~ 36542356 (+) True trnap-agg-101
trnap-agg-102 mRNA downstream 6248 36544747 ~ 36544818 (+) True trnap-agg-102
trnap-agg-103 mRNA downstream 8704 36547203 ~ 36547274 (+) True trnap-agg-103
TU909468 other upstream 221493 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1166150 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 1981676 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2416558 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3950910 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 495919 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 1028746 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1531717 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2249562 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2394453 38932952 ~ 38933868 (+) True G801851

Expression Profile