RNA id: TU909661


Basic Information

Item Value
RNA id TU909661
length 288
lncRNA type read_through
GC content 0.39
exon number 2
gene id G799221
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36563392 ~ 36585315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attccagagagtggtcatatgaatttgtaggtcaaacggttcggaagctagagatgtttttgtgagaagaccgattataggtattgtctcatggtttgacaaaaaccgatctaggtccaccatctttcactgcagatatggaggggtaacataagcagttgtggaggattgagacggatacgccgagtcttaatctctctagttgaaaacggatctatttgaatgggtattttcaaaattaattgactttgattcatgtacctttgcgtcatttgactcaaaataaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU909659 lncRNA upstream 24893 36538298 ~ 36538499 (+) True G799219
TU909658 lncRNA upstream 26910 36536238 ~ 36536482 (+) True G799218
TU909656 lncRNA upstream 39728 36523384 ~ 36523664 (+) True G799216
TU909654 lncRNA upstream 68340 36476096 ~ 36495052 (+) True G799214
TU909637 lncRNA upstream 103974 36447598 ~ 36459418 (+) True G799200
TU909664 lncRNA downstream 25552 36610867 ~ 36622475 (+) True trnap-agg-149
TU909681 lncRNA downstream 45976 36631291 ~ 36631528 (+) True G799239
TU909687 lncRNA downstream 54515 36639830 ~ 36640639 (+) True G799245
TU909691 lncRNA downstream 59995 36645310 ~ 36645631 (+) True G799249
TU909692 lncRNA downstream 60369 36645684 ~ 36646031 (+) True G799250
trnap-agg-115 mRNA upstream 725 36562596 ~ 36562667 (+) True trnap-agg-115
trnap-agg-114 mRNA upstream 2128 36561193 ~ 36561264 (+) True trnap-agg-114
trnap-agg-113 mRNA upstream 3359 36559962 ~ 36560033 (+) True trnap-agg-113
trnap-agg-112 mRNA upstream 4590 36558731 ~ 36558802 (+) True trnap-agg-112
trnap-agg-111 mRNA upstream 5993 36557328 ~ 36557399 (+) True trnap-agg-111
trnap-agg-132 mRNA downstream 320 36585635 ~ 36585706 (+) True trnap-agg-132
trnap-agg-133 mRNA downstream 1722 36587037 ~ 36587108 (+) True trnap-agg-133
trnap-agg-134 mRNA downstream 3124 36588439 ~ 36588510 (+) True trnap-agg-134
trnap-agg-135 mRNA downstream 4526 36589841 ~ 36589912 (+) True trnap-agg-135
trnap-agg-136 mRNA downstream 5928 36591243 ~ 36591314 (+) True trnap-agg-136
TU909468 other upstream 246587 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1191244 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2006770 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2441652 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 3976004 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 449103 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 981930 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1484901 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2202746 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2347637 38932952 ~ 38933868 (+) True G801851

Expression Profile