RNA id: TU909705



Basic Information


Item Value
RNA id TU909705
length 239
lncRNA type intronic
GC content 0.50
exon number 1
gene id G799262
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 36670117 ~ 36670355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtacagagagatccttgatgaaaacctgctccagagtgctcaggacctcagactgaggtgaaggttcaccttccaataggactacgaccctaagcacacagccaagacaatgcaaaactggcttcgggacaagtctctgaatgtccttgagtggatcAGCCAGAACCTTGACTTGAACcctatctaacatctctggaaagacctgaaaatagctgggcagcgactctccccatccaacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU909701 lncRNA upstream 11820 36657848 ~ 36658297 (+) True G799258
TU909692 lncRNA upstream 24086 36645684 ~ 36646031 (+) True G799250
TU909691 lncRNA upstream 24486 36645310 ~ 36645631 (+) True G799249
TU909687 lncRNA upstream 29478 36639830 ~ 36640639 (+) True G799245
TU909681 lncRNA upstream 38589 36631291 ~ 36631528 (+) True G799239
TU909706 lncRNA downstream 1001 36671356 ~ 36671617 (+) True G799263
TU909693 lncRNA downstream 11803 36682158 ~ 36684295 (+) False G799251
TU909694 lncRNA downstream 11803 36682158 ~ 36685079 (+) True G799251
TU909714 lncRNA downstream 22630 36692985 ~ 36693304 (+) True G799270
TU909775 lncRNA downstream 113843 36784198 ~ 36784407 (+) True G799326
trnap-agg-150 mRNA upstream 57774 36612272 ~ 36612343 (+) True trnap-agg-150
trnap-agg-149 mRNA upstream 59177 36610869 ~ 36610940 (+) False trnap-agg-149
trnap-agg-148 mRNA upstream 60579 36609467 ~ 36609538 (+) True trnap-agg-148
trnap-agg-147 mRNA upstream 61981 36608065 ~ 36608136 (+) True trnap-agg-147
trnap-agg-146 mRNA upstream 64785 36605261 ~ 36605332 (+) True trnap-agg-146
XR_002474793.2 mRNA downstream 264706 36935061 ~ 36937214 (+) True LOC110531983
XM_021615539.2 mRNA downstream 267493 36937848 ~ 36942240 (+) False adtrp1
XM_021615538.2 mRNA downstream 267911 36938266 ~ 36942240 (+) True adtrp1
XM_021614398.2 mRNA downstream 271154 36941509 ~ 36953375 (+) True LOC110531160
XM_021615541.2 mRNA downstream 290960 36961315 ~ 36970867 (+) True LOC110531987
TU909468 other upstream 353312 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1297969 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2113495 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2548377 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 4082729 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 364063 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 896890 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1399861 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 2117706 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 2262597 38932952 ~ 38933868 (+) True G801851

Expression Profile