RNA id: TU910061



Basic Information


Item Value
RNA id TU910061
length 258
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G799590
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37025627 ~ 37025884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agttagtgaaccaggcgaggcagtcaactgagaaaccaaggctgttgagtctgccgataagattaAGGTGATTGATagtgtcgaaagccttggccaggtcgatgaagacggctgcacagtactgtcttttatcgatgcggttatgatatcgtgtAGTATCtagagcgtggctgaggtgcacccgtgaccagctcggaaaccggattgcacagcggagaaagTACTGTGGGATTCGacatggtcagtgatctgtttgtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU910043 lncRNA upstream 3046 37022222 ~ 37022581 (+) True G799573
TU910006 lncRNA upstream 45771 36979521 ~ 36979856 (+) True G799536
TU909912 lncRNA upstream 191864 36827899 ~ 36833763 (+) True G799457
TU909796 lncRNA upstream 205026 36820050 ~ 36820601 (+) True G799347
TU909791 lncRNA upstream 220813 36804533 ~ 36804814 (+) True G799342
TU910053 lncRNA downstream 20834 37046718 ~ 37048303 (+) True G799582
TU910097 lncRNA downstream 68872 37094756 ~ 37094961 (+) True G799626
TU910101 lncRNA downstream 74413 37100297 ~ 37100529 (+) True G799630
TU910245 lncRNA downstream 347275 37373159 ~ 37377209 (+) True G799762
TU910265 lncRNA downstream 389823 37415707 ~ 37417325 (+) True G799779
XM_021615541.2 mRNA upstream 54760 36961315 ~ 36970867 (+) True LOC110531987
XM_021614398.2 mRNA upstream 72252 36941509 ~ 36953375 (+) True LOC110531160
XM_021615539.2 mRNA upstream 83387 36937848 ~ 36942240 (+) False adtrp1
XM_021615538.2 mRNA upstream 83387 36938266 ~ 36942240 (+) True adtrp1
XR_002474793.2 mRNA upstream 88413 36935061 ~ 36937214 (+) True LOC110531983
XR_005053235.1 mRNA downstream 4876 37030760 ~ 37063684 (+) True LOC118966039
XM_021615545.2 mRNA downstream 76755 37102639 ~ 37166005 (+) True nup210
XM_021615553.2 mRNA downstream 154006 37179890 ~ 37357280 (+) False iqsec1a
XM_021615546.2 mRNA downstream 154006 37179890 ~ 37360016 (+) False iqsec1a
XM_021615547.2 mRNA downstream 252928 37278812 ~ 37360016 (+) False iqsec1a
TU909468 other upstream 708822 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 1653479 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2469005 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 2903887 34121422 ~ 34121740 (+) True G796495
TU904694 other upstream 4438239 32583606 ~ 32587388 (+) True G794886
TU910049 other downstream 8534 37034418 ~ 37035918 (+) True G799578
TU910348 other downstream 541361 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 1044332 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 1762177 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 1907068 38932952 ~ 38933868 (+) True G801851

Expression Profile