RNA id: TU910816


Basic Information

Item Value
RNA id TU910816
length 1083
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G800275
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37360857 ~ 37361967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttggcattctctcaaccagcttcaccttgaatgcttttccaacagtcttgaatgagttcccacatgctgagcacttgttggctgcttttcattcactctgcagtccaactcatcccaaaccatctcaattgggttgaggtcggggaattgtggaggccaggtcatctgatgcagcactccttcactctccttcttggagaaagtgtgtttggtcattgtcctgttgaaaaacaaatgatggtgccactaatcccaaaccagaagggatggcgtatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatcacagacagtgtcaccagcaaagcacccccacaccataacacctcctcctccatgctttacggtgggaaatacacatgcagagatcatccgttgcatctcacaaaaacacggcggtgggaaccaaaaatctcaaatttagactccagaccaaaggacagatttcaaccggtttaatgtccattgctcgtgtttcttggccaaagcaagtctcttcttcttattggtgtccttcagaaGTGGTTCCTTTGCAGCAATGCGACCCTGAAGGCCTGAGTCACACAtcctcctctgaacaattgatgttgataTTTGTCTGTTCCTTGaactgaagcatttatttgggctgcaatttctgagactggtaactctaatgatcttatcctctgcagcagaggtaactatgggttttcctttcctgtggcggtcctcatgagagccagtttcatcatagcgcttgacagtttttgcgactgcactttcaaagttcttgaaattttccatattgactgaccttcatgtcttaaagtaatggactgtcctttctctttgcttatttgagatgtaccaaatagggatatcttctgtatacccccctaccttgtcacaacataactgattggctcaaacgcattaagaaggaaataaattccacaaattaacttttaagaaggcgcacctgttaattgaaatgcattccaggtgactacctcatgaagctggttgagagaatgccaagagtgtgcaaagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU910817 lncRNA downstream 133 37356933 ~ 37360724 (-) True G800276
TU910682 lncRNA downstream 139862 37135664 ~ 37220995 (-) True G800155
TU910607 lncRNA downstream 336086 37024007 ~ 37024771 (-) True G800088
TU910538 lncRNA downstream 469308 36891045 ~ 36891549 (-) True G800024
TU910501 lncRNA downstream 529278 36827896 ~ 36831579 (-) True LOC110531982
TU910879 lncRNA upstream 23423 37385390 ~ 37386330 (-) True G800334
TU910911 lncRNA upstream 52968 37414935 ~ 37417799 (-) True G800358
TU910942 lncRNA upstream 115760 37477727 ~ 37526430 (-) True G800389
TU910965 lncRNA upstream 151182 37513149 ~ 37516432 (-) True G800411
TU910970 lncRNA upstream 164775 37526742 ~ 37527090 (-) True G800416
XM_021615543.2 mRNA downstream 279088 37034299 ~ 37081769 (-) False LOC110531988
XM_036987913.1 mRNA downstream 279088 37034299 ~ 37081769 (-) True LOC110531988
XM_021615544.2 mRNA downstream 279158 37034299 ~ 37081699 (-) False LOC110531988
XM_036987909.1 mRNA downstream 396937 36953521 ~ 36963920 (-) True fbxw12
XM_036987910.1 mRNA downstream 396943 36953521 ~ 36963914 (-) False fbxw12
XM_021615554.2 mRNA upstream 3710 37365677 ~ 37372883 (-) True LOC110531992
XM_021615556.2 mRNA upstream 11253 37373220 ~ 37377287 (-) False cnbpa
XM_036987917.1 mRNA upstream 11253 37373220 ~ 37377288 (-) True cnbpa
XM_036986927.1 mRNA upstream 67926 37429893 ~ 37436192 (-) False LOC100505416
XM_036986928.1 mRNA upstream 67926 37429893 ~ 37436192 (-) False LOC100505416
TU910862 other downstream 15710 37344395 ~ 37345147 (-) True G800318
TU910500 other downstream 453209 36827896 ~ 36907648 (-) False LOC110531982
TU909355 other downstream 1210220 36150338 ~ 36150637 (-) True G798993
TU909208 other downstream 1381742 35977422 ~ 35979115 (-) True LOC110531979
TU908458 other downstream 1839525 35492026 ~ 35521332 (-) True LOC118966032
TU912701 other upstream 1479242 38841209 ~ 38841512 (-) True LOC110532015
TU912768 other upstream 1604489 38966456 ~ 38996032 (-) True G802100
TU912807 other upstream 1688563 39050530 ~ 39061381 (-) True G802138
TU912821 other upstream 1712514 39074481 ~ 39074720 (-) True G802149
TU913322 other upstream 2018783 39380750 ~ 39383210 (-) True G802602

Expression Profile