RNA id: TU910245


Basic Information

Item Value
RNA id TU910245
length 1780
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G799762
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37373159 ~ 37377209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTAGCAATACAAGACCTAGAAGAAATATAAGCATGGAAAGAAATGTAAACAATCATCCTCCCTGTGCTCCTCCAGCTTTATTGATAGTTTAAAATTACATTTCTATGTTCTAGGACTTCAGTTGCATTTCCTTCCGACTTAAAAACTGAGTACAAGCAAATGGTATTTTTACAGTAGTCTAAGTGATATtgtacaaaaataacatttgatttgtgaaAACATTCTCCACTCCCAAATAACTGCGAATTCTTATGATCTGACAACTGTGTTCTTGATGCACATTTTTCCTCCAAGGTAAAAGTTTCCAAAAATCATTTTTTGGGGGAAACATCTACCTTGGACTATTTACCCATACTCCTTTAAATTgtaaacaattattttttttctatTATAAAAGAACTTAAGATTCTTTCAAAACGGCTTTTGTCGATATAACACATCATTTATGTTATCGCCCGGCACTTAGCTGCTTGTAGGGCCCAGATGCAGATGGGTCATATGGTGTGAACTGTTACCCATGTCATATGCTCTTGGCCAACTCATGTTATCCCGCTAAAACAAACCATACATGGAAGTTCAGGTTTCTTTTTACTCCCTTCTTACTGAGACTCACTTCCCACAAGCCCAGAGGTCCTCTATATCTCATATATTTAGTCCCATTCATTCATCTCTGCTCACCAGTGGCTTGGAAAGGGGGATTCTTTAACAAAGCATTAAACATAACACTGCTACCAAACTAAACAAAATTTTTGTGTTGAATGcagaaagattttttttttttacccctttctcAATATTACATGTCGAGAGGCTCACTGGCCCGGGACTAGCCTCGGTCAGCCAACCTTTGGCCGGTGAAGACGATTCAGAGAAAATAATACAACCAACCATCAACCAGAAAAAAATAGGAGGGGCAACAAAGGGCACTGATTATGCTGTGGCTTCAATGGTGCACTCTTTCGCAAGGTGGCCGGTGTTGCCGCACTTGTAGCAGTTCACCTCACTGGCTTTGCTGCACTGCACAGCCACATGGCCGATCTCGCCACACCTGGGGGAAGGGGAAACAGAATGTCGGTCGACCAAGCATAAGAGTTCATATTTGCATGGCTCTGTCGAACTAAACTGGAAATGGCTGCCACGGCAATGGTTTTTGCTAACTCTCAAAAAAGCACAAACATTTATAAATCTAGATACACAGCACAACTACTTGAAAGCTTGCCAATTAGATTATACATGCCTATAACTAAAGACTACAGCAAAATCATTTGTCCCCAAAAGAAGGGGGTACCAGAGACTGCATGTCACTCCTGTGAAGACTTGTCGAAACGCGTAGCGTTTGTGCTTTCAGCAGTTGTTAGTGAAGTTTGCTATGTACATGGGAACATGCAAGCATGAGTCGGTACCATGTGTTTTCATTACCACATTTTTTCCCACAAAATACTTTCACTATGTGGTCACTCACCTGTAACATTTGACTTTATCGCAAAGTTTCTGGATGTGGCCAAAGCCTCCGCAGGAATAGCACTTCTGCTCGTTGGCATGGTCGCAGTCGCGGGCAATGTGACCTTGCTCTCCACAGCGATAGCAGAACAGatctcttcctctgcccCTGCCGCGGCCACGCCCTCCAGCTTCGGGACAGTTCTTGATCCAATGCCCAGGACGGCCACATCGGAAGCACTCGCTACTGCTCATCTCCATAATCTTAGCTAGCAACCTAGCTACGCGATTCTCTGCTGTTGACGCCTCCTCTCTCCGTTGCGCCACATGCGGTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU910101 lncRNA upstream 272630 37100297 ~ 37100529 (+) True G799630
TU910097 lncRNA upstream 278198 37094756 ~ 37094961 (+) True G799626
TU910053 lncRNA upstream 324856 37046718 ~ 37048303 (+) True G799582
TU910061 lncRNA upstream 347275 37025627 ~ 37025884 (+) True G799590
TU910043 lncRNA upstream 350578 37022222 ~ 37022581 (+) True G799573
TU910265 lncRNA downstream 38498 37415707 ~ 37417325 (+) True G799779
TU910266 lncRNA downstream 39342 37416551 ~ 37418064 (+) True G799780
TU910271 lncRNA downstream 61482 37438691 ~ 37438943 (+) True G799785
TU910275 lncRNA downstream 67935 37445144 ~ 37446422 (+) True G799789
TU910326 lncRNA downstream 152808 37530017 ~ 37530463 (+) True G799837
XM_021615555.2 mRNA upstream 8311 37362028 ~ 37364848 (+) True gp9
XM_021615546.2 mRNA upstream 13143 37179890 ~ 37360016 (+) False iqsec1a
XM_021615547.2 mRNA upstream 13143 37278812 ~ 37360016 (+) False iqsec1a
XM_021615549.2 mRNA upstream 13143 37293440 ~ 37360016 (+) False iqsec1a
XM_021615551.2 mRNA upstream 13143 37297203 ~ 37360016 (+) False iqsec1a
XM_021615557.2 mRNA downstream 2740 37379949 ~ 37424276 (+) False raf1a
XM_021615558.2 mRNA downstream 2743 37379952 ~ 37424276 (+) True raf1a
XM_021615561.2 mRNA downstream 133334 37510543 ~ 37516918 (+) False LOC110531997
XM_021615560.2 mRNA downstream 133339 37510548 ~ 37516918 (+) False LOC110531997
XM_021615562.2 mRNA downstream 133345 37510554 ~ 37516918 (+) True LOC110531997
TU910049 other upstream 337241 37034418 ~ 37035918 (+) True G799578
TU909468 other upstream 1056354 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 2001011 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2816537 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 3251419 34121422 ~ 34121740 (+) True G796495
TU910348 other downstream 190036 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 693007 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 1410852 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 1555743 38932952 ~ 38933868 (+) True G801851
TU912578 other downstream 1691163 39068372 ~ 39072225 (+) True LOC110532019

Expression Profile