RNA id: TU910275


Basic Information

Item Value
RNA id TU910275
length 1253
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G799789
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37445144 ~ 37446422 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGTTACCATAAAAACAacaggacttttttttttttttttacagtagtcTATTGTAATTGTGTAAGTTATCTAATATGCTTGTCCTCATACACATGAAAACAGCTATGGCTGTGTTCTGTGCATAAGAGACAGGTTAATAAACTGTCAAAGAACTGTCTTTCTAAGCGTTGGTTGTTATAGCAACATTCACTGATGGAAGTATCTTGATGGGTAAGCTATCTGCTAATAATGGACAAAGACAAATCTATATATCATGTCCTTTCAAACAACGCATGGAATGAAAGTTTACATAGCAGTGATCTGGCTGGCTGTATGGCTCTAACATTTGGTTGTTTATGCATACATCTATGTTGTTTAACTTTTACAATATGCATTTGTTATGACACATTCACAATGCATAAATCACAAGGAACATAGTTTGGATCAAAAGAATAATAGTGGTGTCACTAAAGAAACATCCAGAATGAGAAGGGAAAAAAAACATACTGTTACCTGCCTGAATATCATTCatgcaaaacaaaaataaatatctATTATATTAGTATATGTATGAAAATAATTACCACTACAGTCATACGCACCAACATGTACATATTGACATATACACAAACGTCAAACTGCACAACAAACCACAGTTTGAACAATATCTAAAAGTACACACCAAAATGGAGaaataaatgggggggggggggggggggggggggggtagagggagggcaAATAATGAATAATGACTGAATCAAACATTGGGCACACACAGCAGCACTGGACTCAGTGTAGGCACAATCTGCTTATTACACTGTCAACAACAGCCCCAAAGAACCACGGCTACAGAGAAACAGAGGCGACCGTTACAAGCACACTAAATCAACAGGGAAACACGTTAACAGTACATCTTGACACTGCATAGAGGAAAAACACAGTCCAGGCCAGCACTACACTCTGGCCCAAACTAATACCAGCCAGATCTCAGTTCGTCTACCGTCTCTCCCCCCAACACCCTCCCCGCTTGTGTCCAGCTAATGTACGTCATCATCATTTCGATATTAGATAGACTTCCTCCCTGGCGGGCTACTCAGTTGGCCTGAACGGGTTTTGGCCCCACTGCAACGCCATTACAGTCGAGAATGTACTGCAGACAACCTTGAGGAGGGTGTGCAGTGCCAGTCTTGGGATCAACCACGAGGTCCTTCTGGCCACCACTCTGCAAACACACGAAACACAGTGATACTCCCAGGGACACTACAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU910271 lncRNA upstream 6201 37438691 ~ 37438943 (+) True G799785
TU910266 lncRNA upstream 27080 37416551 ~ 37418064 (+) True G799780
TU910265 lncRNA upstream 27819 37415707 ~ 37417325 (+) True G799779
TU910245 lncRNA upstream 67935 37373159 ~ 37377209 (+) True G799762
TU910101 lncRNA upstream 344615 37100297 ~ 37100529 (+) True G799630
TU910326 lncRNA downstream 83595 37530017 ~ 37530463 (+) True G799837
TU910353 lncRNA downstream 135755 37582177 ~ 37582635 (+) True G799863
TU910386 lncRNA downstream 182432 37628854 ~ 37630852 (+) True G799895
TU910495 lncRNA downstream 336903 37783325 ~ 37783538 (+) True G799983
TU910496 lncRNA downstream 337586 37784008 ~ 37784214 (+) True G799984
XM_021615557.2 mRNA upstream 20868 37379949 ~ 37424276 (+) False raf1a
XM_021615558.2 mRNA upstream 20868 37379952 ~ 37424276 (+) True raf1a
XM_021615555.2 mRNA upstream 80296 37362028 ~ 37364848 (+) True gp9
XM_021615548.2 mRNA upstream 85128 37334987 ~ 37360016 (+) False iqsec1a
XM_021615561.2 mRNA downstream 64121 37510543 ~ 37516918 (+) False LOC110531997
XM_021615560.2 mRNA downstream 64126 37510548 ~ 37516918 (+) False LOC110531997
XM_021615562.2 mRNA downstream 64132 37510554 ~ 37516918 (+) True LOC110531997
XM_021615570.2 mRNA downstream 158779 37605201 ~ 37610174 (+) False tnnc1a
XM_021615571.2 mRNA downstream 158779 37605201 ~ 37610174 (+) True tnnc1a
TU910049 other upstream 409226 37034418 ~ 37035918 (+) True G799578
TU909468 other upstream 1128339 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 2072996 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 2888522 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 3323404 34121422 ~ 34121740 (+) True G796495
TU910348 other downstream 120823 37567245 ~ 37570411 (+) True G799858
TU911427 other downstream 623794 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 1341639 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 1486530 38932952 ~ 38933868 (+) True G801851
TU912578 other downstream 1621950 39068372 ~ 39072225 (+) True LOC110532019

Expression Profile