RNA id: TU910348


Basic Information

Item Value
RNA id TU910348
length 2594
RNA type TUCP
GC content 0.40
exon number 3
gene id G799858
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37567245 ~ 37570411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agccTTTTTTCTTTTTGTATAACATGACAATCGTGCTTTATCATATGACACCATTTAAACACATATcatgtttatattatgttgtgcaTTAGGCAGTGAGACAGttcaaaataaacaaaacaatgtgattttttttactAGACATAGTTTCTATTTTTAATATAATCGTCAATATCTTCATTGTCATCATCATTTCGTATATTTCTGTAAGATATGTGCTTTAGTTTCTGTGATCAAAATGTTATTGCAGAAAACAGCAACtctttagaattttttttttcaacatttAGACAATAACTTCCAATGTATTACAGACATTCACAGTTACATGTTTTACACGGTACAGTTTTACAACAAAGTTCCAGAGAAAACTGTGGTAGAGTAACTTTATACAAAATTCACAGGACATGAACTGTAGCCATTTCACATTTTCACTTGGTTGTTTTGCTTTTCAAAGTAAACATGTTTTGTTCGACCGGATGCTTTTCACTGCCGTATAGAAGCCATATAAGCCAACTAGCATTGTCTTAACAGGCCATGTCAAATGTCTGTGGAAATTAAAGCTTTGAGCTTTTTACTAGTAAAGCAAAGACAACgaaaagaaaaagagaaacagACCACTCTTCTACTGGCCTGCAACTATACATCTACATTTGTATTGCTGAATACAAATTGATCAAAGTATAATTGATCATTACacataaagtgaaataaaaaggAATATTTTTAAACATAGAGTTGGTCCAATATTGTTTGCTAGTGTACAAAGTGATATTCTGGAGATCTGCCCAGTCATGCAAACAGACTATGGCTTGGTATAAATTGGTTGATAACTGGCTTAAGGCCTTCTCTGTTCTCGTCTTAGATCTGCCAGGAGACATTTTGGAATTTTTCTTTGATGTTCCTGAGGAAAGCATGCAAAAAAAGGTAAACAGGATTGACTGTCAGCATCAATGGGATAGTCAATGTTTGTAAATCACTTTTCTATACCCTGTGCGTTTGCATTCatttttttgtatgtttttgATACCCTGTGTTTCTCAAACCAAACACTACATGGCATAGATCGTTTTTGCTTTCGTCTGCCTACGATTTTGGTCCTCGGTCACAATATTTATAGTAGAAAACATATTAAAAATAATTCTAAAAATGTTTGTCACATAAAAGTTCTTTTTTttactaaaaaaaaaaaggaagataaaatcacagtctctctcacacacaaaatcTTTTGCAACAGATATACTGGATAATTCCAGGGTTCATAGACTTTAAACTTCTTATTGGCATTGTGCTTCTTCATCAGAGTTCCCTCATTGCCATGTGGCCTGTAATCAGCCTCACAGAGTGCAAAGTTTTGTAAAGAGATGACTGTGTGAGGCTTAGTAAACAACCACGATAATTTGGCCCCTTGCACTCTCCCATGTTGACAATTTTGTTCACTTGTACTTCATCTCTACTATAGTCACACTGTATTTACTTGGTTCATGAAGATATTGAACAAATTGCTATTCTATTTTCAATAGTTGTTTTCTTTTCTCACAGTATTACACAGTTTGTTTACATATTTTTACTCAGATTACGGTAGTTTTTGTGAACACTAACAGTCTTTGATTTTAGAATTTTTAATGCATACCAATAAAAAGACATTAACGGGTTGGTTTTACAAATGCAGAAAAATTAAACATGATTTTAAAATCCGGTTTGATCAGATATTGCCCCTGGAGGTAGGTGAATCAATTAAAATCTTGGAAGTCCTTTGTAATGTTCGCCGACTACACAATCTCCATGAGGGTTTTGCCTTGTCTAGACATTTGCCTCAGCGTTGGTCAGGTTTGTTGAGCTCACTATGTTGGGTGGTGGGATGGCCGTCTCTTTTGCCGTTGGGCTAACCGGATTGGGTGGTGGGCTGGTAGGGCTGGTCGGGTTGGCTGGAGTGGCAGGGACAGTAGGGACAGTTGGAACGGTCGGACTAGTTGGGTTCACAGGGCTAGCCATAGCTGGAATGGCTGGAGGTGCTGGGTTGGCCGGGGCTGCAGCAACCGGGCTTGTAGCAGTTGGATTGGCAGGACTAACCGGGTTGGATGGACTAGTTGGGTTGGCCGCGTTAGAGGGACTAGCAATGTTGGTCTCGGCAACCACTGTCTCAGGTCCGTTCTCCTGTGGCCGTCGGACCACTGCAGGAGGCTGGAACATTATCCGTAGGCGCTCTTTCCAGGTGCCCTTGAGTCCGAGGTACATGTAGACCATGTATCCAGGGATGAGGACCATGGAGGACAGAGCCATGAGCCAGCCCACTCCCTGGCCCCAGGCAGGGAACACGTAGTTGTTCAAGGTGAGAGGAACCATTTGGACTGCACTGAACAAGAACACCCCGGCCACGATGAGAGGGGTGAAACAAACCCAGCACAGCTTCCACCAGATACAGGGCTTGTAGCCAATCATCTCCTGGATGTTGTCATAGAATTTGTTCACACCTGCGAGACAAATGACTGTGTTATCAAAATATTCAAATTCAATTTCTTCCAATTTTCCACTGGTCTGCCATGAATTGTAATGAGGGAGGAGAGCTGGTGTAGTGTAGGACATGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU910326 lncRNA upstream 36782 37530017 ~ 37530463 (+) True G799837
TU910275 lncRNA upstream 120823 37445144 ~ 37446422 (+) True G799789
TU910271 lncRNA upstream 128302 37438691 ~ 37438943 (+) True G799785
TU910266 lncRNA upstream 149181 37416551 ~ 37418064 (+) True G799780
TU910265 lncRNA upstream 149920 37415707 ~ 37417325 (+) True G799779
TU910353 lncRNA downstream 11766 37582177 ~ 37582635 (+) True G799863
TU910386 lncRNA downstream 58443 37628854 ~ 37630852 (+) True G799895
TU910495 lncRNA downstream 212914 37783325 ~ 37783538 (+) True G799983
TU910496 lncRNA downstream 213597 37784008 ~ 37784214 (+) True G799984
TU910497 lncRNA downstream 214018 37784429 ~ 37784956 (+) True G799985
XM_021615561.2 mRNA upstream 50327 37510543 ~ 37516918 (+) False LOC110531997
XM_021615560.2 mRNA upstream 50327 37510548 ~ 37516918 (+) False LOC110531997
XM_021615562.2 mRNA upstream 50327 37510554 ~ 37516918 (+) True LOC110531997
XM_021615557.2 mRNA upstream 142969 37379949 ~ 37424276 (+) False raf1a
XM_021615558.2 mRNA upstream 142969 37379952 ~ 37424276 (+) True raf1a
XM_021615570.2 mRNA downstream 34790 37605201 ~ 37610174 (+) False tnnc1a
XM_021615571.2 mRNA downstream 34790 37605201 ~ 37610174 (+) True tnnc1a
XM_036987918.1 mRNA downstream 95931 37666342 ~ 37717107 (+) True LOC110517304
XM_021615574.2 mRNA downstream 150655 37721066 ~ 37729844 (+) False LOC110532004
XM_021615575.2 mRNA downstream 150655 37721066 ~ 37729844 (+) False LOC110532004
TU910049 other upstream 531327 37034418 ~ 37035918 (+) True G799578
TU909468 other upstream 1250440 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 2195097 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 3010623 34555931 ~ 34556622 (+) True G797056
TU906563 other upstream 3445505 34121422 ~ 34121740 (+) True G796495
TU911427 other downstream 499805 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 1217650 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 1362541 38932952 ~ 38933868 (+) True G801851
TU912578 other downstream 1497961 39068372 ~ 39072225 (+) True LOC110532019
TU912870 other downstream 1662654 39233065 ~ 39237261 (+) True LOC110531165

Expression Profile