RNA id: TU911357



Basic Information


Item Value
RNA id TU911357
length 216
lncRNA type intronic
GC content 0.38
exon number 2
gene id G800776
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 37970458 ~ 37973015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtcagtcattgtctctgattgggagccatatttaggtagcctgttttctattgtgttttgtgggtggttgtatcctgtgttagtgttttcaccatacgggactgtttcggttgtttgtttgtacttttgttattttgttcagtgttctgttgatttattaaatatatcattatggacacttaccacactgcacattggtctgatccttgctactcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU911303 lncRNA upstream 50091 37920109 ~ 37920367 (+) True G800727
TU911281 lncRNA upstream 62878 37907267 ~ 37907580 (+) True G800705
TU911157 lncRNA upstream 141225 37825979 ~ 37829233 (+) True G800589
TU911151 lncRNA upstream 155600 37814445 ~ 37814858 (+) True G800583
TU911144 lncRNA upstream 164203 37805966 ~ 37806255 (+) True G800576
TU911371 lncRNA downstream 16349 37989364 ~ 37989649 (+) True G800789
TU911416 lncRNA downstream 77318 38050333 ~ 38052651 (+) False G800826
TU911417 lncRNA downstream 77318 38050333 ~ 38055272 (+) True G800826
TU911426 lncRNA downstream 97201 38070216 ~ 38071433 (+) False G800834
TU911429 lncRNA downstream 97201 38070216 ~ 38071433 (+) True G800834
XM_021615579.2 mRNA upstream 21496 37923872 ~ 37948962 (+) True LOC110532007
XM_021615578.2 mRNA upstream 64528 37863680 ~ 37905930 (+) False LOC110532006
XM_021615577.2 mRNA upstream 64528 37863685 ~ 37905930 (+) True LOC110532006
XM_021615574.2 mRNA upstream 240614 37721066 ~ 37729844 (+) False LOC110532004
XM_021615591.2 mRNA downstream 4409 37977424 ~ 37979829 (+) True LOC110532009
XM_036987921.1 mRNA downstream 48666 38021681 ~ 38030421 (+) False LOC110532011
XM_036987920.1 mRNA downstream 48667 38021682 ~ 38033223 (+) False LOC110532011
XM_036987923.1 mRNA downstream 49290 38022305 ~ 38033223 (+) True LOC110532011
XM_021615595.2 mRNA downstream 895254 38868269 ~ 38884647 (+) False LOC110532014
TU910348 other upstream 400047 37567245 ~ 37570411 (+) True G799858
TU910049 other upstream 934540 37034418 ~ 37035918 (+) True G799578
TU909468 other upstream 1653653 36313129 ~ 36316805 (+) True G799053
TU908119 other upstream 2598310 35364988 ~ 35372148 (+) True G797932
TU907166 other upstream 3413836 34555931 ~ 34556622 (+) True G797056
TU911427 other downstream 97201 38070216 ~ 38071433 (+) False G800834
TU912414 other downstream 815046 38788061 ~ 38788354 (+) True G801778
TU912489 other downstream 959937 38932952 ~ 38933868 (+) True G801851
TU912578 other downstream 1095357 39068372 ~ 39072225 (+) True LOC110532019
TU912870 other downstream 1260050 39233065 ~ 39237261 (+) True LOC110531165

Expression Profile