RNA id: TU912928


Basic Information

Item Value
RNA id TU912928
length 1522
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G802241
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39258408 ~ 39259969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTTACTGCAAGCCAACGCAACACAGGGCATTAAATGCCGTACTGGTATAATGGAGTTAACAAAACACGATGACACACATTTTGTATCAAGTTTTTTTGGTTTATTTTCATTTAAATATGGTTTAAACTGCCTTATGCTGACATTAAAGATCAAATCATAAAAGGAGACTTCATGAAAAGCTTACGCAGCCATTCTGTAGTGAGAGGAATCAGTCCGGTTTGGGATACAACATTTCCTTTaaaattctttttttttctttttctgaaCAAAAAAGCAGATGATTTGTGTAAAAATGAATATCATAGCAAATACCACAGTGAGGGGAGGATAAGTTATATGTCTTAAAAATTGATAACGTAATGAAAGATAATCATGATACGAACAGGAGAGTGGTCATGAAAAGAAAACAAAATGAAAAGTACTGTTTCTGCGAACTCGATTAAACACGAATTCACATACGGACGCACACTCACTGGCAAACACACTCACGCAcaaacaggcacacacgcactcactctcactcacacacacacatactgtagaagcacccacactcacgcacgcacacacagatAAATTGAAGTGATTTGAAAAATGAAACCCTGGTAAAAATCTAATGGTATCATACATCCACGTCTTGTGTCTGAAGTGCAGAAAACAACTGGAAAAAAATTGAGAGCGATAAATCAGATGCATAATGAAAAAGCATGCCCATCTTCACTGATCTAACACAACCCTATCCGACTAAAAACCTGTTGCCCCTCTATCCTCACCCCAACCCCTCTATCCTATACCCTTACCTGCCCAAAGCCCACCCATGCCCTTACCTCTTACCCCACCCATACCTACATCCCCACTGGGcaaacactggttgaatcaacgttgtttccacgtcatttcaatgaaacgACGTGGAACCAATGTgggaattgacgtctgtgcccagtgggtgccCACCTACACCTCACCCACATGCTTCTGTTGTGACAGGTCTGGTCCTTGTGTCTATGTGGATCGGGCCCTCCCTGTTCGCCTCTATCAAACACAATGTCCAATTCAGTATACAGagtgaggttggagggagagaagtCTCGTTGCATGTTGAGGTTGAAGGTTGTGAACCTgtctgtgtatgggtgtgtatgagtgtgtgtacagtTTGTGTATAAATACACGTCTGAATCTGCATGTTTAGTCAGTGTGTctcaatgtgagtgtgtgtgtctgtgtgttagttagtgagtctgtgtgagtgagtgtgtgtgtgtgtgttgacgggTTGGGGGTAGCACGGGGGTTGGTCGACACAGGGCCTGTCCCTCATCCCCGTCCCCAGATAGGGACAGGCTTATAGGGCTTGTGTCTTGAGCTCGATGGGCTCCCCGCGGGCGTCCTGCTGGGTCTCCGTCTCGGGGGGTCGGCTGCCCTTCAGTGTGGCCAGGCGCTCAGAAAGACCGCGCATGCGGGGAAACAGCATGAAATCGTACAGAAGAGCTCCCATAGCACCTCCTATCATGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU912885 lncRNA upstream 28778 39228635 ~ 39229630 (+) False LOC110531165
TU912918 lncRNA upstream 42045 39215311 ~ 39216363 (+) True G802231
TU912909 lncRNA upstream 50624 39207537 ~ 39207784 (+) True G802222
TU912841 lncRNA upstream 160627 39097494 ~ 39097781 (+) True G802169
TU912830 lncRNA upstream 170568 39087611 ~ 39087840 (+) True G802158
TU912985 lncRNA downstream 62647 39322616 ~ 39322837 (+) True G802292
TU912864 lncRNA downstream 66061 39326030 ~ 39330048 (+) False G802191
TU912866 lncRNA downstream 66061 39326030 ~ 39330048 (+) False G802191
TU912867 lncRNA downstream 66061 39326030 ~ 39384896 (+) False G802191
TU912865 lncRNA downstream 67786 39327755 ~ 39334050 (+) True G802191
XM_036987944.1 mRNA upstream 1782 39240179 ~ 39256626 (+) True LOC110532020
XM_036987940.1 mRNA upstream 21000 39111355 ~ 39237408 (+) False LOC110531165
XM_036987942.1 mRNA upstream 21000 39111358 ~ 39237408 (+) False LOC110531165
XM_036987943.1 mRNA upstream 21000 39111363 ~ 39237408 (+) False LOC110531165
XM_036987941.1 mRNA upstream 21000 39168033 ~ 39237408 (+) False LOC110531165
XM_021615615.2 mRNA downstream 115399 39375368 ~ 39383225 (+) True LOC110532026
XM_021615616.2 mRNA downstream 141066 39401035 ~ 39411199 (+) True ddx23
XM_021615618.2 mRNA downstream 205962 39465931 ~ 39513879 (+) False adcy6a
XR_002474798.2 mRNA downstream 241284 39501253 ~ 39503641 (+) False LOC110532032
XM_021615623.2 mRNA downstream 271490 39531459 ~ 39542666 (+) False g6pd
TU912870 other upstream 21147 39233065 ~ 39237261 (+) True LOC110531165
TU912578 other upstream 186183 39068372 ~ 39072225 (+) True LOC110532019
TU912489 other upstream 324540 38932952 ~ 38933868 (+) True G801851
TU912414 other upstream 470054 38788061 ~ 38788354 (+) True G801778
TU911427 other upstream 1186975 38070216 ~ 38071433 (+) False G800834
TU913019 other downstream 155906 39415875 ~ 39417460 (+) False G802324
TU913020 other downstream 155906 39415875 ~ 39417460 (+) False G802324
TU913022 other downstream 155906 39415875 ~ 39417460 (+) False G802324
TU913023 other downstream 155906 39415875 ~ 39417460 (+) False G802324
TU913024 other downstream 155906 39415875 ~ 39417460 (+) True G802324

Expression Profile