RNA id: TU913019


Basic Information

Item Value
RNA id TU913019
length 1511
RNA type TUCP
GC content 0.53
exon number 2
gene id G802324
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 39415875 ~ 39417460 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtacataaacgTCTTAGGGATTTAAGGCCAGTAAATGTGTCATTCTAAAATAGAGAAACCTTATGCAAAGAATCTTAACATTTGACTTGACCTACAGCCAGTAGTTATAGCTTGCTATTGTGGAGGTGAGTAGCCCTGTTGACGTATAGCCTTTTATCTGATTAACATGACCCCAGCTAATCAGAATGAGTAAAACCGTAAGCCTGGAAGTGTGTGATTGTAGAAGGTGGTAATGTGCACAGCAGTCAGTAATTGTTTTGGGGACAATTGGTACTACATTGTTTCCATAGTTAGGGTGAGTGGTTGGGGACAAGGAGCACACTTATTGTGTACAAGTGGGTGTCTTGTGGCCAAAGTTGTAGTTTGGGTATAGCTAGTTGTCCTGGGGCCAGGGGTACGTTAGAGATGTCAGTAGTTGTCTTGGGGCCAGTGGTACGTTAGAGATGTCAGTAGTTGTCTTGGGGCCAGGGGTACGTTAGAGATGTCAGTAGTTGTCTTGGGGCCAGTGGTACGTTAGAGATGTCAGTAGTTGTCTTGGGGCCAGGGGTACGTTAGAGATGTCAGTAGTTGTCTTGGGGCCAGGGGTACGTTAGAGATGTCAGTAGTTGTCTTGGGGCCAGGGTACGTTAGAAATGTCAGTAGTTGTCTTGGGGCCAGTGGTATGCTAGAGATGTCAGTAGTTGTCTTGGGGCCAGGGTACGTTAGAAATGTCAGTAGTTGTCTTGGGGCCAGGGGTACGTTAGAGATGTCAGTAGTTGTCTTGGGGCCAGGGTACGTTAGAAATGTCAGTAGTTGTCTCGGGGCCAGTGGTATGCTAGAGATGTCAGTAGTTGTCTTGGGGCCAGGGGTACGTTAGAGATGTCAGTAGTTGTCTCGGGGCCAGTGGTATGCTAGAGATGTCAGTAGTTGTCTTGGGGCCAGGGTACGTTAGAAATGTCAGTAGTTGTCTCGGGGCCAGTGGTATGCTAGAGATGTCAGTAGTTGTCTTGGGGCCAGGGTACGTTAGAAATGTCAGTAGTTGTCTCGGGGCCAGGGGCGGCTGCGTTGGCAGTTGTTGCGCTGGTTGTGCCCCTGCTGGGCATCGCGCTGGAGCAGCCTGTCCTGTGATTCATGCCCGTTGGTGCTGTGGACGCCCCCGCGGTGACCGCGGTGAGGGGGGTACCTGTCCCTGTAAGTTTGGGCGTGGCAAGGGGACTCAAACTCATCCTCCTCATCTAGTTCCTCTTCTAATTCCTCCACCagctcctcgtcctcctcgtccCCCCGGAGGCGTGGGCCCCCAAGGAGGCCGCGGGACAGGGAGTCGCTGCCTTCTTCAGACGGCATCAGGCTGTCCTGCTCCAGAGGGGAGTGGgcctccacctcctcaccctccacccCCACACTGCTGTGCTGCACTGGGGGCTGGTTCTTATTCTGGGTCTGGGGTTTGGTgttggagagggggggagggggagggagataatAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU913026 lncRNA upstream 157 39415399 ~ 39415718 (+) False G802325
TU913030 lncRNA upstream 228 39415399 ~ 39415647 (+) True G802325
TU913028 lncRNA upstream 726 39414725 ~ 39415149 (+) False G802325
TU913010 lncRNA upstream 17782 39397878 ~ 39398093 (+) True G802317
TU913006 lncRNA upstream 25336 39390298 ~ 39390539 (+) True G802313
TU913037 lncRNA downstream 18906 39436366 ~ 39516038 (+) True G802328
TU913063 lncRNA downstream 29623 39447083 ~ 39469432 (+) True G802353
TU913040 lncRNA downstream 85040 39502500 ~ 39503569 (+) True LOC110532032
TU913103 lncRNA downstream 136727 39554187 ~ 39556665 (+) True G802392
TU913111 lncRNA downstream 140805 39558265 ~ 39562731 (+) True G802399
XM_021615616.2 mRNA upstream 4676 39401035 ~ 39411199 (+) True ddx23
XM_021615615.2 mRNA upstream 32650 39375368 ~ 39383225 (+) True LOC110532026
XM_036987944.1 mRNA upstream 159249 39240179 ~ 39256626 (+) True LOC110532020
XM_036987940.1 mRNA upstream 178467 39111355 ~ 39237408 (+) False LOC110531165
XM_036987942.1 mRNA upstream 178467 39111358 ~ 39237408 (+) False LOC110531165
XM_021615618.2 mRNA downstream 48471 39465931 ~ 39513879 (+) False adcy6a
XR_002474798.2 mRNA downstream 83793 39501253 ~ 39503641 (+) False LOC110532032
XM_021615623.2 mRNA downstream 113999 39531459 ~ 39542666 (+) False g6pd
XM_021615621.2 mRNA downstream 114026 39531486 ~ 39542666 (+) False g6pd
XM_021615620.2 mRNA downstream 114028 39531488 ~ 39542666 (+) False g6pd
TU912870 other upstream 178614 39233065 ~ 39237261 (+) True LOC110531165
TU912578 other upstream 343650 39068372 ~ 39072225 (+) True LOC110532019
TU912489 other upstream 482007 38932952 ~ 38933868 (+) True G801851
TU912414 other upstream 627521 38788061 ~ 38788354 (+) True G801778
TU911427 other upstream 1344442 38070216 ~ 38071433 (+) False G800834
TU913038 other downstream 48513 39465973 ~ 39473557 (+) True adcy6a
TU913483 other downstream 221794 39639254 ~ 39640869 (+) True spryd4
TU913562 other downstream 372197 39789657 ~ 39790402 (+) True G802821
TU913563 other downstream 374457 39791917 ~ 39792333 (+) True G802822
TU913576 other downstream 392867 39810327 ~ 39812025 (+) False G802830

Expression Profile